PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G05270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 310aa    MW: 33031.9 Da    PI: 8.4591
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G05270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.41.3e-3186141359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      ++rY+eClkNhAa++Gg a+DGCgEfmp+ ge+g+ +al+C+ACgCHRnFHR+e+++
  LPERR12G05270.1  86 AARYRECLKNHAAAIGGSATDGCGEFMPA-GEDGSLDALRCSACGCHRNFHRKEPQN 141
                      689*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2887139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2188138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-3088138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57689138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-28197271IPR009057Homeodomain-like
SuperFamilySSF466891.35E-18199271IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-27210266IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDLSGTQGEL PMPPMHAASS PYFGLHHHHH HAATAAGGGG GMNGRHVSPP TPVATATAAE  60
MESNSKAVVL SPSPSPSPSS ASASAAARYR ECLKNHAAAI GGSATDGCGE FMPAGEDGSL  120
DALRCSACGC HRNFHRKEPQ NPHAHHLFGP MPHRGGGHHH HLLVATLPPP PHPPPAPTRM  180
VMPLNAAMHH HHMQQTSESD DAARSPAAAR KRFRTKFTAE QKARMLGFAE EAGWRLQKLD  240
DGVVQRFCGE IGVKRRVLKV WMHNNKHTLA RRNHHHHHHL AGDGDISGDI AGDGGDGQPT  300
ATATTTHHQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-242112681875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G05270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548536e-63AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149686e-63AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443023.11e-99zinc-finger homeodomain protein 3
RefseqXP_021321592.11e-99zinc-finger homeodomain protein 3
SwissprotQ2QW444e-84ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A0D9XXS90.0A0A0D9XXS9_9ORYZ; Uncharacterized protein
STRINGLPERR12G05270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-51homeobox protein 31