PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G04190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 379aa MW: 43062.5 Da PI: 6.5114 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 3e-16 | 132 | 178 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W+ I ++ gR +kqc++rw+++l LPERR12G04190.1 132 KGHWTLEEDRKLVKLVEQFGLKKWSQIGGILP-GRVGKQCRERWYNHL 178 789*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7e-17 | 184 | 226 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ LPERR12G04190.1 184 KDNWSEEEDMVLIQIHKEVGNR-WAEIAKRLP-GRTENSIKNHWN 226 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.402 | 127 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.38E-31 | 130 | 225 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-15 | 131 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 133 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.56E-14 | 135 | 178 | No hit | No description |
Pfam | PF13921 | 1.1E-18 | 135 | 192 | No hit | No description |
PROSITE profile | PS51294 | 20.061 | 183 | 233 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-17 | 183 | 231 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.61E-13 | 186 | 229 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 187 | 231 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDFSCFIPQP VISDTMQFQP FEQQELHPVV LDHPFEAEGI TVHESALAGG SVHPFTTLHD 60 IDHELFRRGI RKDVIIDNAS SIFLLNPKSE VSHLVRGVNF GGYGAGGYEM NGRLISRKKT 120 SRKATKKAGA VKGHWTLEED RKLVKLVEQF GLKKWSQIGG ILPGRVGKQC RERWYNHLRP 180 NIKKDNWSEE EDMVLIQIHK EVGNRWAEIA KRLPGRTENS IKNHWNATKR RQFARKRNRS 240 TSKSASTVLQ NYIKSIAIDP LSPQESQMND ERLEFNSSDM MLTQGTLCLD ENNCSHSHTS 300 EGHIVPGCDG FATEMWSGLF DAKEDEEETQ YLLYDIDTDV DLNCIFSHMD YASNIEPGFT 360 SLVTPEGSAE SRAMHLKMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-42 | 131 | 233 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-42 | 131 | 233 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G04190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664387.1 | 0.0 | PREDICTED: uncharacterized protein LOC102717115 | ||||
TrEMBL | A0A0D9XXE5 | 0.0 | A0A0D9XXE5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G04190.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-62 | myb domain protein 98 |