PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G04110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 408aa    MW: 41099.7 Da    PI: 6.3607
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G04110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.25.6e-42962432128
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++   + s  s+++  +g      
  LPERR12G04110.1  96 AAAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsL-NISIRSGAAAAAGggnsgr 188
                      6789*****************************************************************88852.3333333222222344554 PP

              TCP  89 .kaaksaa.kskksqksaasalnlakesr...............akarararertre 128
                       +  ++ a ++++ q++ +++  ++++++                 +    r+r re
  LPERR12G04110.1 189 aSPFPALAlHPHQHQHDVTAMMGYHHHHHlipqqeapppqhqqqDGSF--MRKRYRE 243
                      455555556888888889999999998888877666665543222222..4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.5E-38102244IPR005333Transcription factor, TCP
PROSITE profilePS5136928.705102156IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEHAGGGGGG GGGGGAPPPS SSNNSGGGGE QNHPHHHSFY YSGPAAAAPS FMGALAITPV  60
VTTGEPSPSS SSAAAGGGGE KKAVVVAPTT PGTVVAAAKR PSKDRHTKVD GRGRRIRMPA  120
LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSSLN ISIRSGAAAA  180
AGGGNSGRAS PFPALALHPH QHQHDVTAMM GYHHHHHLIP QQEAPPPQHQ QQDGSFMRKR  240
YREDLFKEDD DRQQDPKGRG EQPAAAAMWA VAPNTAAPGG AFWMLPVSAA GGAAGAGGGR  300
PGEQPMWSFA GSGGGGAGTV QAPLQFMSTR VNYPAAAGAG GGGAGGMSDT NLGMLAALNA  360
YNRGAGDQQQ QQPEMDQQRG GDDDDDDGDD SGDEDNGGGG GGNNNSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G04110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618822.11e-134transcription factor PCF3-like
SwissprotQ53PH28e-68PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0D9XXD60.0A0A0D9XXD6_9ORYZ; Uncharacterized protein
STRINGLPERR12G04110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-46TCP family protein