PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G03440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 184aa MW: 20760.4 Da PI: 7.344 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 38 | 80 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ W+ E ++v+av+ +G++ ++ I+r++g +++ ++ck ++ LPERR12G03440.1 38 RNDWSDNEKSKFVRAVRIHGKN-FTMISRYLG-TKSIEECKIYFS 80 789*****************99.*********.********8875 PP | |||||||
2 | Myb_DNA-binding | 27.7 | 6.2e-09 | 101 | 143 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+ + ++v+a +G++ ++ I+r++g +R+ ++c+ ++ k LPERR12G03440.1 101 DWSDRDKSKFVQALSIYGKN-FTMISRYIG-TRSIEECITFFAKT 143 6*****************99.*********.*******9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 35 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.52E-12 | 36 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.262 | 36 | 87 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-7 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-8 | 38 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-7 | 41 | 79 | No hit | No description |
PROSITE profile | PS51293 | 14.529 | 97 | 148 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 2.54E-10 | 98 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-6 | 98 | 146 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-4 | 101 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-6 | 101 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.47E-7 | 102 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAIGESSSAR EAFRGPKSRA PCPYNSGDSK FDHSELDRND WSDNEKSKFV RAVRIHGKNF 60 TMISRYLGTK SIEECKIYFS KAQRVLNLDM IAVESELEGD DWSDRDKSKF VQALSIYGKN 120 FTMISRYIGT RSIEECITFF AKTRGAGVAG RINMATMEAT MAINEDYFDA DIDSTFAAIR 180 PGLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G03440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9XX40 | 1e-134 | A0A0D9XX40_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G03440.1 | 1e-135 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 2e-12 | MYB family protein |