PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G02290.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 407aa    MW: 45078.1 Da    PI: 4.4549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G02290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.71.1e-2351361126
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkya...tgkrknratk..sgy 82 
                      +ppGfrF+Pt eel+++yL++ ++g+++e+ +  + ++d+y ++P +L +      +v +++k wyf s +++k +   +  r+nr ++   g 
  LPERR12G02290.1   5 VPPGFRFEPTHEELISDYLNHWITGRPIEELHGiVVKADVYGTDPATLTQaheeyaHVGKTTKAWYFLSVAKRKGNkrgNAGRNNRCIDgdLGN 98 
                      69*************************88866548899**********8546766555557779****99988877333456899965545899 PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      W+++ + k+v+       g ++ + + +g+++k  kt+W+m+e 
  LPERR12G02290.1  99 WHNSQRRKAVHG-----FGERQAFEYRTGEHNK-DKTEWLMEEL 136
                      *****9999988.....99*******9998888.8*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-234158IPR003441NAC domain
PROSITE profilePS5100526.4385158IPR003441NAC domain
PfamPF023655.1E-156135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDVKVPPGFR FEPTHEELIS DYLNHWITGR PIEELHGIVV KADVYGTDPA TLTQAHEEYA  60
HVGKTTKAWY FLSVAKRKGN KRGNAGRNNR CIDGDLGNWH NSQRRKAVHG FGERQAFEYR  120
TGEHNKDKTE WLMEELMSNL PAAITDEGTM VICKVYKSPR KNKGDENVVG KKRLRLGQQH  180
ESAADETSDQ AATASTEFYC PTTTYTSGHA SNAVNYNDYS ADFATIKPED YDNNNYDNFA  240
INTQAADYDA GCYNDFLINT DMAEPAYDAG YYGDFPMNTG ATEPGYDAGY YGEAGIGVGA  300
EMVPLAMQSS NGEMTYFVAN QMYGQGNGVT SIEEARQESE MPLAIQDSNG ENTNFAPMYG  360
HDHGVGGSNE MRRESRVEDD PSMDAFLDSL FADVGKDDPN PNPDGHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G02290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XWR10.0A0A0D9XWR1_9ORYZ; Uncharacterized protein
STRINGLPERR12G02290.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-11NAC domain containing protein 32