PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G02200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14655.4 Da PI: 4.6136 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35 | 4.3e-11 | 13 | 107 | 29 | 128 |
NAM 29 eleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118 ++e+ i+++d+y eP+dL v+ ++ + +fF++ ++++ +++r++ +g+W + ev++ +g +vg +++ f ++g LPERR12G02200.1 13 DTENLIHHADLYGGEPNDLAGmfaPVERcDNGDRFFFTSCKQHN----ESERKAGDGTWVRLSN-MEVKNDEGVKVGETQSFRFK----KDGMY 97 45567**************8434533332344779999987754....6788899*****9876.7888889************7....78999 PP NAM 119 tdWvmheyrl 128 t+W+m+e + LPERR12G02200.1 98 TEWLMEEHHC 107 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.609 | 1 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.29E-14 | 16 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-6 | 28 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MSEFVFDRVP PKDTENLIHH ADLYGGEPND LAGMFAPVER CDNGDRFFFT SCKQHNESER 60 KAGDGTWVRL SNMEVKNDEG VKVGETQSFR FKKDGMYTEW LMEEHHCAVQ QAVASEEEPV 120 ICRMYML |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G02200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616101.1 | 3e-56 | uncharacterized protein LOC107278013 | ||||
Refseq | XP_015619129.1 | 4e-56 | NAC domain-containing protein 41 | ||||
TrEMBL | A0A0D9XWP8 | 6e-92 | A0A0D9XWP8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G02200.1 | 1e-92 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |