PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR12G01450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40825.9 Da PI: 7.4202 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.9 | 4.3e-49 | 19 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF+Pt ee++ yL kk+ + +++ +i ev+++k+ePw+Lp+k+k +ekewy+F+++ ky+tg r+nratk+gyWkatg+d+e+++ LPERR12G01450.1 19 LPPGFRFSPTGEEVILSYLLKKCLNPSFTS-LAIGEVNLNKFEPWELPSKAKMGEKEWYYFCHKGMKYHTGMRANRATKEGYWKATGRDREIFK 111 79*************************988.67***************99999***************************************** PP NAM 95 k........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++lvg+kktLvfy g+apkg+kt+Wvmhe+rl LPERR12G01450.1 112 QpaatnnknDKQLVGMKKTLVFYMGKAPKGNKTNWVMHEFRL 153 9999988877777***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-55 | 17 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.185 | 19 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-23 | 20 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MMETSTAVVK LERDGGLFLP PGFRFSPTGE EVILSYLLKK CLNPSFTSLA IGEVNLNKFE 60 PWELPSKAKM GEKEWYYFCH KGMKYHTGMR ANRATKEGYW KATGRDREIF KQPAATNNKN 120 DKQLVGMKKT LVFYMGKAPK GNKTNWVMHE FRLHANLHND YPNLRLNPKD EWVVCKVFHK 180 KHGDEANKQQ QHPSTAVEYS VGTHKNGSSI LEPSDDDIFF DPNIFISDPT DSLSAPPSNN 240 NVVYSVSTAS ATTTTTSTSS QLPNYSLINK SSSAPLQQHV SSWNNMPYQP HVSEGFHGIE 300 SSYSLQHQAA MEEALGDVIG DPDFGTVPSY KGLSRSAMAG VSQQRSLGVP PYKLDEDPFL 360 WDWC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 17 | 181 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 17 | 181 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 17 | 181 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 17 | 181 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 17 | 181 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-47 | 17 | 181 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 17 | 181 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR12G01450.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT829509 | 1e-139 | CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620530.1 | 1e-155 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 1e-156 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A0D9XWE7 | 0.0 | A0A0D9XWE7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G01450.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.2 | 9e-69 | Arabidopsis NAC domain containing protein 87 |