PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G01440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 399aa    MW: 44468.9 Da    PI: 6.6671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G01440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.3e-52101371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+v+yL ++ ++ ++++  +i+ev+iyk++PwdLp k+  +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls
  LPERR12G01440.1  10 LPPGFRFHPTDEELIVHYLMNQSASISCPV-PIIAEVNIYKCNPWDLPGKALFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILS 102
                      79***************************9.88***************8777899**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  LPERR12G01440.1 103 TpTSDHIGVKKALVFYKGKPPKGTKTDWIMHEYRL 137
                      988889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-635147IPR003441NAC domain
PROSITE profilePS5100557.67610186IPR003441NAC domain
PfamPF023652.8E-2611137IPR003441NAC domain
SuperFamilySSF1019411.44E-63174186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPSSSAMPAL PPGFRFHPTD EELIVHYLMN QSASISCPVP IIAEVNIYKC NPWDLPGKAL  60
FGEKEWYFFS PRDRKYPNGA RPNRAAGSGY WKATGTDKAI LSTPTSDHIG VKKALVFYKG  120
KPPKGTKTDW IMHEYRLTGT STNNNSSTKR RASSMTMRDC TLLIVYCIFD IVHQLDDWVL  180
CRIHKKSNDF SDQQEQEPEG STVDQLEEIH ENNSSQTPAP ADMNNEHSAF HPMMMSMSKS  240
CSLTDLLNTI DCAALSQFLL DGSSESAEPT APPSPLIYND PCQSLNYNVN NNMPHAFDAR  300
QDHHADGHVK NYNGLRRKRM MACSSGVTSF DDGSSEFLQV TKKPLLPSDS RGSSGFGGGY  360
CNQQLAETTT GFQFQNSSLL SHPFPLNQQL LLNNHLQMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-69918819170NAC domain-containing protein 19
3swm_B8e-69918819170NAC domain-containing protein 19
3swm_C8e-69918819170NAC domain-containing protein 19
3swm_D8e-69918819170NAC domain-containing protein 19
3swp_A8e-69918819170NAC domain-containing protein 19
3swp_B8e-69918819170NAC domain-containing protein 19
3swp_C8e-69918819170NAC domain-containing protein 19
3swp_D8e-69918819170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G01440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1675471e-144KU167547.1 Oryza sativa cultivar Moctuyen transcription factor (NAC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620532.10.0NAC transcription factor 29
SwissprotQ8H4S47e-80NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A0D9XWE60.0A0A0D9XWE6_9ORYZ; Uncharacterized protein
STRINGLPERR12G01440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-74NAC domain containing protein 47
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]