PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G00330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 506aa    MW: 55984.7 Da    PI: 8.8858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G00330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31383439360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      DgynWrKYGqK+vkgs+fprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  LPERR12G00330.1 383 DGYNWRKYGQKQVKGSKFPRSYYKCTHPTCPVKRKVETTL-DGQIAEIVYNGEHNHPK 439
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.0E-4013225No hitNo description
PROSITE profilePS5060013.42921185IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1303.3E-684179No hitNo description
PfamPF029029.8E-593189IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.6E-27376440IPR003657WRKY domain
PROSITE profilePS5081122.94376440IPR003657WRKY domain
SuperFamilySSF1182907.85E-25377440IPR003657WRKY domain
SMARTSM007742.0E-34381439IPR003657WRKY domain
PfamPF031062.3E-24383438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MRPRRGGDKE EEERVLSHGD VVLLRCDLKI LGGPHLLNDR IIAFYLAHLQ SQSHGDLLLL  60
LPPSIPYLLS NLPDPASVAA VAEPLRLPSR RLVLLPVNDN PDVSHAEGGT HWTLLLLDNT  120
NPISGPRFVH HDSLPPTNLP SARRLAAVLR PLLPKRTIPL VEGPTPRQTN GYDCGVFVLA  180
VARAICHWWT TASHQLEPDW FEAVKREVNA DSVKAMRTQL LHLIDTLIQA NNNTTNNQHP  240
STQLPCPPSI ASTSLCLSQH TRLWCHMQSH KKVAAVKPVA SRPSSRLRTF SMLPKDSTAT  300
DSPWVTSEEE AIILRRPKAS RFTPPMNNSS TDVAATRLED SGTHRTYDKK KADAGQVACR  360
DNLTVPQRVR KPIISVKNSL SYDGYNWRKY GQKQVKGSKF PRSYYKCTHP TCPVKRKVET  420
TLDGQIAEIV YNGEHNHPKP HPAKKPSLSS IVETVDATND GGLETRLEGC DQAIGSDAIV  480
EAFEGGFNCL DGFGNGNEIS NCKKKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xt9_A2e-27151875176Sentrin-specific protease 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G00330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418600.0AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.10.0PREDICTED: uncharacterized protein LOC102718700
TrEMBLA0A0D9XVY30.0A0A0D9XVY3_9ORYZ; Uncharacterized protein
STRINGLPERR12G00330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-25WRKY DNA-binding protein 3