PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR11G20420.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRAS

Protein Properties

Length: 681aa MW: 75958.4 Da PI: 4.8508

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G20420.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.2	1.7e-104	297	674	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av++gd ++a+ lL+++++++sp+gd++qRla +f+e+L+arla+++se+yk+l +++ts ++ l+a+kl+ + + k+ LPERR11G20420.2 297 LRTLLIHCAQAVATGDRRNATDLLSQIKHHSSPRGDATQRLACCFAEGLEARLAGTGSEVYKSLMSKRTS---AVDFLKAYKLYTAAICVKKVN 387 6789**********************************************************999998...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ N++I +a++g+ ++Hi+D+++ +G+QWp L++ La+R++g+p++RiTg++ p++g ++++eetg+rLa+ A+e+gvpf+f++ +a ++ LPERR11G20420.2 388 FIFFNNTIHDAAAGKPKLHIVDYGVHYGFQWPGLFKLLADRDGGAPEVRITGIDLPQPGfrPAHQIEETGRRLANCAREFGVPFKFRA-IAAKW 480 *******************************************************99*************************.799 PP GRAS 187 edleleeLrvkp..gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 e+++ e+L+++ +E+l+Vn+ + l +l desv + +rd vL+ +++++Pkv+v + + ++++ F++rf eal yysa fd+l+a LPERR11G20420.2 481 ETIRAEHLDIDAddDEVLVVNCLHGLNNLQDESVFAVDddkpsPRDVVLRNIRDMRPKVFVECVVNGAYGAPFFVTRFREALFYYSAQFDMLDA 574 ******999999************99986554455669********************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 ++pr+s+er +Er ++gr + nv+acega+r+ r et+++W r ++aG++++pl+ + ++ ++ +++++ + + ++ ++ +l++gWk+r L LPERR11G20420.2 575 TIPRDSDERLLIERDIIGRCALNVIACEGADRVDRPETYKQWAVRHHRAGLTQLPLDAHLVQVVRDKVKNYYHRDFVIDVDQRWLLQGWKGRIL 668 ********************************************************************999*************** PP GRAS 368 vsvSaW 373 +++S W LPERR11G20420.2 669 YAMSTW 674 **** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.362	271	655	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-102	297	674	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MAAAAAQEEQ LVVEPFSPSI FLDLPPTPNE EDQDLLLPYI SRMLMEEDID DKFFYQFPDH 60 PALLNAQQPY AQILEDTTSP SDDTTTNNTS SSSGDDSTAN ANAGDWPYDP IELSQLLQSP 120 PHPDTVTLAD DDDVIAAFRD ATTQQPPEDE AAAGENKNNM EMLLNKAFQK GMEEATKFLP 180 TNNTLLAGFN PDPVLDDTAA FILGNSRGRK NRPHDDLEAE TGRSSKLMVP PDQDDTAAAR 240 QMFDEIMLNG YEVFLKGMHD LRIAMDSDAE KKARSNAPAA GRRRSKTSSP SAAVVDLRTL 300 LIHCAQAVAT GDRRNATDLL SQIKHHSSPR GDATQRLACC FAEGLEARLA GTGSEVYKSL 360 MSKRTSAVDF LKAYKLYTAA ICVKKVNFIF FNNTIHDAAA GKPKLHIVDY GVHYGFQWPG 420 LFKLLADRDG GAPEVRITGI DLPQPGFRPA HQIEETGRRL ANCAREFGVP FKFRAIAAKW 480 ETIRAEHLDI DADDDEVLVV NCLHGLNNLQ DESVFAVDDD KPSPRDVVLR NIRDMRPKVF 540 VECVVNGAYG APFFVTRFRE ALFYYSAQFD MLDATIPRDS DERLLIERDI IGRCALNVIA 600 CEGADRVDRP ETYKQWAVRH HRAGLTQLPL DAHLVQVVRD KVKNYYHRDF VIDVDQRWLL 660 QGWKGRILYA MSTWVRDGGG P

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MAAAAAQEEQ LVVEPFSPSI FLDLPPTPNE EDQDLLLPYI SRMLMEEDID DKFFYQFPDH  60
PALLNAQQPY AQILEDTTSP SDDTTTNNTS SSSGDDSTAN ANAGDWPYDP IELSQLLQSP  120
PHPDTVTLAD DDDVIAAFRD ATTQQPPEDE AAAGENKNNM EMLLNKAFQK GMEEATKFLP  180
TNNTLLAGFN PDPVLDDTAA FILGNSRGRK NRPHDDLEAE TGRSSKLMVP PDQDDTAAAR  240
QMFDEIMLNG YEVFLKGMHD LRIAMDSDAE KKARSNAPAA GRRRSKTSSP SAAVVDLRTL  300
LIHCAQAVAT GDRRNATDLL SQIKHHSSPR GDATQRLACC FAEGLEARLA GTGSEVYKSL  360
MSKRTSAVDF LKAYKLYTAA ICVKKVNFIF FNNTIHDAAA GKPKLHIVDY GVHYGFQWPG  420
LFKLLADRDG GAPEVRITGI DLPQPGFRPA HQIEETGRRL ANCAREFGVP FKFRAIAAKW  480
ETIRAEHLDI DADDDEVLVV NCLHGLNNLQ DESVFAVDDD KPSPRDVVLR NIRDMRPKVF  540
VECVVNGAYG APFFVTRFRE ALFYYSAQFD MLDATIPRDS DERLLIERDI IGRCALNVIA  600
CEGADRVDRP ETYKQWAVRH HRAGLTQLPL DAHLVQVVRD KVKNYYHRDF VIDVDQRWLL  660
QGWKGRILYA MSTWVRDGGG P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-40	303	675	25	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G20420.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006663689.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A0D9XVR4	0.0	A0A0D9XVR4_9ORYZ; Uncharacterized protein
STRING	LPERR11G20420.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-157	GRAS family protein