PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR11G14110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 206aa MW: 22220.6 Da PI: 9.0287 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 44.5 | 2.1e-14 | 152 | 183 | 3 | 32 |
GATA 3 nCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 +Cg + Tp++Rrgpdg++tLCnaCGl ++ LPERR11G14110.1 152 HCGISAkaTPMMRRGPDGPRTLCNACGLIWAN 183 88877778*********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.692 | 27 | 64 | IPR010399 | Tify domain |
SMART | SM00979 | 1.2E-8 | 27 | 64 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.8E-10 | 30 | 63 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.5E-8 | 84 | 117 | IPR010402 | CCT domain |
SMART | SM00401 | 5.8E-5 | 144 | 201 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-7 | 151 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.6E-12 | 151 | 184 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.09E-9 | 151 | 184 | No hit | No description |
Pfam | PF00320 | 3.9E-12 | 152 | 184 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MDAAAAVAAM GAQMDPHGTM VAAATVPPMA SNQLTLSFQG EVYVYVFDSV SPDKVQAVLL 60 LLGGRELNPE VEFSTPGGIF NAFQRKAERN FGKKIRCSVR KEVALRMQRN RGQFTSSKPK 120 GDEATSELTA ADVSPKWGSL EGRPPSAAEG HHCGISAKAT PMMRRGPDGP RTLCNACGLI 180 WANKVPDYFE MRITVNILKT GVCIFM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR11G14110.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT836527 | 1e-139 | CT836527.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121E14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882282.1 | 6e-90 | GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 5e-91 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0D9XTD9 | 1e-152 | A0A0D9XTD9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G14110.1 | 1e-153 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-50 | ZIM-LIKE 2 |