PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 265aa    MW: 29055.1 Da    PI: 9.3798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.61.8e-34181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp G +F+Pt+ elv +yL +++++ +l+l ++i+++di++++Pw++   ++ +++  +fF++++ k++  +r+nrat +g+W++tg++ +v+ 
  LPERR11G11970.1  18 LPTGSKFRPTEGELVFHYLYRRAAQMPLPL-DFIPNIDILRHNPWEIV-PAQDKKNGKHFFTRKEYKHPGYRRRNRATGDGFWRSTGSEVPVYY 109
                      699***************************.99**************5.455677899************************************ PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k     ++ lvg+k+ Lvf+ g+++++e t+W m+e+rl
  LPERR11G11970.1 110 KpsaggDDMLVGMKRALVFHYGKSSSAEPTEWAMQEFRL 148
                      9888777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3914158IPR003441NAC domain
PROSITE profilePS5100537.65518198IPR003441NAC domain
PfamPF023651.1E-1719148IPR003441NAC domain
SuperFamilySSF1019412.48E-39186198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAGGGVCITL VNGSTMHLPT GSKFRPTEGE LVFHYLYRRA AQMPLPLDFI PNIDILRHNP  60
WEIVPAQDKK NGKHFFTRKE YKHPGYRRRN RATGDGFWRS TGSEVPVYYK PSAGGDDMLV  120
GMKRALVFHY GKSSSAEPTE WAMQEFRLAG TCLLQCPMKG QVTSGGSSNA ENNAAGLSSA  180
LTQVVPDSSW LICRIYKKRQ RAPQIIIPPA FGNAGEVMIP PAIGNASEQS QVRFIDFLGQ  240
APRARPSSSA CSIALSFEGS DESTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-241414811140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.11e-101PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0D9XSI40.0A0A0D9XSI4_9ORYZ; Uncharacterized protein
STRINGLPERR11G11970.10.0(Leersia perrieri)
STRINGLPERR11G11980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-32NAC domain containing protein 47