PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11960.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 306aa    MW: 34235.3 Da    PI: 10.0199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.42e-2171279128
              NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kg 97 
                      Pt+ elv++yL +++ + +l++ ++i++v i++++ wd+      e++  y F++++ k + ++r+nr+t + +W+++ k+k+++ +     ++
  LPERR11G11960.1   7 PTEGELVCYYLYRRAVNLPLPC-NCITDVTILRHNLWDIV---PIERHGKYLFMQKEIKFHGSHRSNRVTGNRFWRSSSKEKPIYYTlgdvaSN 96 
                      **********************.99**************4...3466899************************************97777666 PP

              NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                       lvg+k t +fy g+  ++e+t+W m+e+rl
  LPERR11G11960.1  97 LLVGMKCTPTFYYGKGCTAERTKWGMKEFRL 127
                      66***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.2971158IPR003441NAC domain
PfamPF023655.2E-116127IPR003441NAC domain
SuperFamilySSF1019416.67E-256132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVVCSAPTEG ELVCYYLYRR AVNLPLPCNC ITDVTILRHN LWDIVPIERH GKYLFMQKEI  60
KFHGSHRSNR VTGNRFWRSS SKEKPIYYTL GDVASNLLVG MKCTPTFYYG KGCTAERTKW  120
GMKEFRLADA GVLPCPTMRR ATGDGSKLPY SMHRVSLFLL PFEMQGEGQG QFIYFLRQPP  180
QIDPSIVVSS WGPVWQREVM NLLPELPWTY ARGLRPLGPT RRTPGGVGPG VRQGGHTPQK  240
GFRPPEATRH APEEGTPRGL RGGHIPQKGF GPPEATRHAP EEGTPGGLRG GHVYNHDTPP  300
AANHRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-12712723140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XSI20.0A0A0D9XSI2_9ORYZ; Uncharacterized protein
STRINGLPERR11G11960.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-19NAC domain containing protein 94