PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 283aa    MW: 30811.7 Da    PI: 7.4977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.31.1e-34181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+G rF+Pt+ el+ +yL +++ +k+l+l ++i+++di++++Pwd+   ++++++  yfF+ +++k++ ++r+n ++++g W++ g++ +++ 
  LPERR11G11620.1  18 LPVGSRFRPTEGELIFHYLYPRAIQKPLPL-DFIPNIDILRHNPWDIV-PAQEKKNGKYFFTYKENKNPGDQRQNHTAENGLWRSAGSEVPIYY 109
                      799***************************.99**************5.456677899************************************ PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k      + lvg+k+t+vfy+ +++++e+t+W m+e+rl
  LPERR11G11620.1 110 KpnggaYDILVGMKRTFVFYRVKSSSAERTKWAMKEFRL 148
                      9865544455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3714158IPR003441NAC domain
PROSITE profilePS5100535.90918202IPR003441NAC domain
PfamPF023655.1E-1819148IPR003441NAC domain
SuperFamilySSF1019414.18E-37190201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAGGGVCITL VNGSTMHLPV GSRFRPTEGE LIFHYLYPRA IQKPLPLDFI PNIDILRHNP  60
WDIVPAQEKK NGKYFFTYKE NKNPGDQRQN HTAENGLWRS AGSEVPIYYK PNGGAYDILV  120
GMKRTFVFYR VKSSSAERTK WAMKEFRLAG SCLNSPVMGQ VSNGGSSNGE VTITMNNDGA  180
LSAALTQVVP DSSWLICRLY TKRRRAPQVT IPPVFGNAGE VVIPPAVGNA GEGDPVCFID  240
FLGHAPRVGP SSPTCSIALS YDASDEFSDG EDANDSDNHG KGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-201414811140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-91NAC transcription factor 25
RefseqXP_015697669.11e-91PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0D9XSD80.0A0A0D9XSD8_9ORYZ; Uncharacterized protein
STRINGLPERR11G11620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.13e-30NAC domain containing protein 47