PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G11570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 126aa MW: 14191.3 Da PI: 7.5982 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72.8 | 8.5e-23 | 16 | 125 | 1 | 107 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppG+ F Pt++ lv +yL + + + +l++ e+i+e++i++++P+d+ v+++++ +fF++++ ky+ g+r+nr++ +g+W+a g++ +++ LPERR11G11570.1 16 LPPGYWFCPTEDVLVINYLYPCALHAPLPC-EIITEINILQHHPSDIV-LVEESRTGKHFFTRKEMKYPGGRRNNRVAGNGFWRAPGSEVPIYY 107 79****************************.89**************6.677788899************************************ PP NAM 95 k.....kgelvglkktLv 107 k ++ lvg+++tLv LPERR11G11570.1 108 KpghdgDNVLVGTRQTLV 125 9887766667******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-26 | 8 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.566 | 16 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-8 | 17 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MSGISIPMVN GTMMHLPPGY WFCPTEDVLV INYLYPCALH APLPCEIITE INILQHHPSD 60 IVLVEESRTG KHFFTRKEMK YPGGRRNNRV AGNGFWRAPG SEVPIYYKPG HDGDNVLVGT 120 RQTLVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-17 | 14 | 105 | 13 | 105 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G11570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615934.1 | 3e-53 | NAC transcription factor 25 | ||||
TrEMBL | A0A0D9XSD3 | 1e-89 | A0A0D9XSD3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G11570.1 | 2e-90 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 9e-16 | NAC domain containing protein 83 |