PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 278aa    MW: 30914.6 Da    PI: 9.7146
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.12.6e-30181501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lp G+   Pt+ elv++yL +++ + +l++ ++i++v+i++++Pwd+    ++++++  yfF++++ k + +++ nr+t +g+W+  gk+k+++
  LPERR11G11560.1  18 LPHGCVSIPTEGELVWHYLYRRAVNLPLPC-NFISDVNIMRHNPWDIVpIVATERDNGKYFFMRKEIKFRGSHHINRVTGNGFWRLPGKEKPIY 110
                      57888889**********************.99**************536667788899*********************************** PP

              NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +     ++ lvg+k++L+fy g+ +++e+t+W m+e+rl
  LPERR11G11560.1 111 YTpgngsDNLLVGMKRSLTFYYGKGRTAERTKWGMKEFRL 150
                      99876655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-3614152IPR003441NAC domain
PROSITE profilePS5100532.79418219IPR003441NAC domain
PfamPF023651.5E-1420150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAGSVLCSPL VNGARMQLPH GCVSIPTEGE LVWHYLYRRA VNLPLPCNFI SDVNIMRHNP  60
WDIVPIVATE RDNGKYFFMR KEIKFRGSHH INRVTGNGFW RLPGKEKPIY YTPGNGSDNL  120
LVGMKRSLTF YYGKGRTAER TKWGMKEFRL AGVGVLPYPV MRCANGDDSK PLCGCAEATI  180
ANRNNDLSAV LHCALSLAPM VKRVVQPNES WLICRIYRKR RCAPRVIFPS TIGNARATST  240
PPANGHAREG HVRSIMGPCL AEGSDESVGS SDEKVNEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-191415011140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.14e-90NAC transcription factor 25
TrEMBLA0A0D9XSD20.0A0A0D9XSD2_9ORYZ; Uncharacterized protein
STRINGLPERR11G11560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-26NAC domain containing protein 94