PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G09560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 265aa    MW: 29469.6 Da    PI: 6.9952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G09560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.51.1e-35181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppG+rF+Pt+e l+v+yL +++ + +l++ e+i++++i++++P+d+    +++++  +fF++++ ky+ g+r+nr++ +g W+atg++ ++++
  LPERR11G09560.1  18 LPPGYRFRPTEEVLIVNYLYPRALHMPLPC-EIITDINILQHHPSDIV-PEEESQTGKHFFTRKKIKYPGGHRNNRVVGNGSWRATGSEVPIHC 109
                      79****************************.89**************5.234566799************************************ PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k     ++ lvg+++tLvfy+g+++ ++ t W mhe+rl
  LPERR11G09560.1 110 KlgngaNNMLVGMRRTLVFYNGKSQAAKCTVWAMHEFRL 148
                      9998877778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3810195IPR003441NAC domain
PROSITE profilePS5100537.20518195IPR003441NAC domain
PfamPF023651.2E-1719148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MASTGISIPM VNGAAMHLPP GYRFRPTEEV LIVNYLYPRA LHMPLPCEII TDINILQHHP  60
SDIVPEEESQ TGKHFFTRKK IKYPGGHRNN RVVGNGSWRA TGSEVPIHCK LGNGANNMLV  120
GMRRTLVFYN GKSQAAKCTV WAMHEFRLAG VGLLPPPMMR QTTGDGLELP NGYRDATITK  180
VEPDSSWLIC HVYKKRQRAP RVVILPAIDN AREGQVRFID FLGQLPLEPS SPRSCITDTF  240
SSDDMSDESA GGNEEKDGDC LDEEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-251414811140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G09560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-107NAC transcription factor 25
TrEMBLA0A0D9XRL80.0A0A0D9XRL8_9ORYZ; Uncharacterized protein
STRINGLPERR11G09560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.19e-27NAC domain containing protein 47