PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G09280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 686aa    MW: 75090.1 Da    PI: 6.46
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G09280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.76.2e-2496149155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+ Wtp+LH+ Fv++v++L G ++ +P +il++mk + Lt+++v+SHLQkYRl
  LPERR11G09280.1  96 KPRVAWTPDLHQDFVNVVAKL-GVDNVVPTKILQMMKPNHLTRDNVASHLQKYRL 149
                      79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011011.811130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.2E-6251No hitNo description
PROSITE profilePS5129411.93393152IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2593154IPR009057Homeodomain-like
SuperFamilySSF466893.76E-1694153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2196149IPR006447Myb domain, plants
PfamPF002493.3E-798148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MMKGVTHGAC DYMVKPVNIK EIQNIWQHVL RKRMTKLGNH RHGHDGGAGH KVQSGSVEVD  60
QVCQTRTKRK YSKMRRSDED DYDENKQNIQ FLSQKKPRVA WTPDLHQDFV NVVAKLGVDN  120
VVPTKILQMM KPNHLTRDNV ASHLQKYRLY LKRVNTQTGM EPYQFPARSK HIDEQNYLKN  180
YFENGRYHLS PAMRPVDSSN LFTRMNSASA LGAQLPRMPG ARTCFPSGPS GSLFANISND  240
LVFDTNNSGE SHSDMCRKLW EAETNNVVPS YHSGSLFPYK SNGVVPSNQF ALQSNSGVLT  300
TENQFLAQSN GGVLVPANQY SVQTNGGFLA TGNQYSVQTN GGFLTTGNQF PVQTNGGFLA  360
PANQFPVQSN GGCLAPANQF QIQSNTGFLD VANNFQIQPN GGLSAPTNQC QGRSKSSVLA  420
TATQYPVHSN GGFFATSNQY PVRSNGRFLA PGNQFLVQDN KQYLFQKNPS SANYFSPPGN  480
HFQFMDIGNC SESWQTTMPS KFPDVGHKDG TSFGPLQASI PNINQLSSFA ASGGQVPMFG  540
NDLNSQTLAN MSNDKSVVNI DDQTGPSNVG NNMRSTEMMN GNSTLGSNSS ISSIIPSDLS  600
FSCTLSNIQA DSPLNGGNAD DVLPMFNDIH DQQDFFDKLD DNNGFLTGEN GPEGTGTLDA  660
IVAMLFDDDF GEDDDAVLDR GQEFVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-2096152157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G09280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693656.10.0PREDICTED: two-component response regulator ORR25-like
TrEMBLA0A0D9XRI80.0A0A0D9XRI8_9ORYZ; Uncharacterized protein
STRINGLPERR11G09280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-35response regulator 12