PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G09270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 683aa    MW: 76169.1 Da    PI: 7.2504
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G09270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.22.8e-21192245155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+ Wtp+LH+ Fv++v++  G + A+Pk+il++ k + L +e+v SHLQkYRl
  LPERR11G09270.1 192 KPRVAWTPDLHQDFVNVVAKV-GVDYAVPKKILQMRKPNHLNRENVTSHLQKYRL 245
                      79*******************.********************************8 PP
2Response_reg29.92.9e-1121111188
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEE.STTTHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvt.ahgeeedale 88 
                      vl vd++p+ +++l+++l + +y ++  ++d e al++l+++   +Dl++ D++  +mdG+ ll+ i  e +  ++ ++ + +hg+ +++++
  LPERR11G09270.1  21 VLTVDENPVCLKVLEVMLHHCKY-HAIMTRDTETALQMLRKRPedYDLVISDVQNLDMDGFMLLELIgLEMDLPTQTMMKGvTHGACDYMVN 111
                      799********************.88899**********877777**********************7777766666666666777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-1817131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.4E-2018147No hitNo description
SMARTSM004480.003219122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011016.40220126IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-62197IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.45E-822125No hitNo description
PROSITE profilePS5129410.112189248IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-22189250IPR009057Homeodomain-like
SuperFamilySSF466897.17E-14190249IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18192245IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MNKEAMHGTV VSGKFPEGMC VLTVDENPVC LKVLEVMLHH CKYHAIMTRD TETALQMLRK  60
RPEDYDLVIS DVQNLDMDGF MLLELIGLEM DLPTQTMMKG VTHGACDYMV NPVNIKEIQN  120
IWQHVVRKRM TKLGNHKHGD DGGAGHKVQS WSVEVDMVCQ TQTKRKYSKM RRSDEDDYDE  180
NKENIQFLSQ KKPRVAWTPD LHQDFVNVVA KVGVDYAVPK KILQMRKPNH LNRENVTSHL  240
QKYRLYLKRV NNQTGMDPYQ FPAGWKHINE QNYLKNYFKN GRYHLSPAMP PTDSSNLYTR  300
INSASALGAH GLSLLSTQAV QLRNNQSNLE TVQRGGSLLK NVVLFPYKSN GVAPSNQFAL  360
QSNSGVLAPA NQFFIQSKDG VLVPANQYSV QTNGGFLATG NQFPVQTNDR FLAPVNQFPS  420
NGGLSAPTNQ FQGRSNGSVL ATANQYPVHS NGGFFATAKV QISIQRIHLL QTTSAHLAII  480
FNLRTLETIA NHGKLQCHPM FPDVGQKVGT SFGLLQASIP NINQLSSFAA SGGQQTESSN  540
AGNSMRSTEM INGNFTLGSN SSISSTVPSD MSFGCTFSNL QADSPALLPQ MLDSGNAEDV  600
LPMFNDIHDQ QDFFDQLDDN DFLTGENGPE GTGTLDDIVA MLFDDVRYSH PFFYCRMAAQ  660
FILWSSLVFV FHRIVDARFT RFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-17192248157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G09270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693656.10.0PREDICTED: two-component response regulator ORR25-like
SwissprotQ67W500.0ORR25_ORYSJ; Two-component response regulator ORR25
TrEMBLA0A0D9XRI70.0A0A0D9XRI7_9ORYZ; Uncharacterized protein
STRINGLPERR11G09270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.15e-60response regulator 12