PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G07920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 894aa    MW: 98750 Da    PI: 6.2215
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G07920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.65.7e-29534584252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  LPERR11G07920.1 534 EKSVSLTVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 584
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.143523604IPR003035RWP-RK domain
PfamPF020421.0E-25537584IPR003035RWP-RK domain
SuperFamilySSF542775.89E-23787881No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-23793875No hitNo description
SMARTSM006665.0E-23796878IPR000270PB1 domain
PROSITE profilePS5174525.274796878IPR000270PB1 domain
PfamPF005648.8E-18798877IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MDGAVTPEEC RDGDPDMDML MLSSAFDGLD SYTDLVAGSS VADSIFSSLG FLQSSRPVNY  60
KQDDASITEE GTTSDCSAGL ASGETVCVGM AAVPKPLYGV TLMERMLRAL SVLKEASSGE  120
AILVQVWMPV RNGGQQVLTT SDQPFLLDQK LTGYREVSRQ FMFSAEQGPG LFPGLPGRVF  180
MSGMPEWTSN VMYYHNSEYL RVNYAMRHEV RGSLAMPVFN SSGGSCCAVL EVVMTREKDN  240
FCLEMVNVSN ALQSVQLTTV NAWRHSQSYS SSRNQKLAFM EIFDVLQAVC EAHLLPLALA  300
WIPVRPKRNA HVSVEYGAKF GASNKEVLCI QESACYVNDT RMRDFVQVCA EHPLEKGQGV  360
AGNAYLSNNP FFSSDVKDYN VHAYPLANHA RKFGLQAAVA IRLRSTYTRN DDYVLEFFLP  420
LLCKGGEEQQ LLLESISATM RKVCKSLRTV SDAELKEDAT ARPLNENRSG RRCPSPVNFI  480
YPGQEIDISD KIKTNLPMEH LIESIDEHRA DTKSTNKLKC GNASDGEKRR SSTEKSVSLT  540
VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK IKKVNRSLKR IQNVISSVHG  600
VEGILKYDPS TGCLVSSVSP SIEPLLMNVE HKGSDPLPIE SELPHLNFEP GCDAYGREHV  660
GKDVLHEVQN EQNAEIDFDM DDGGLFQNSH STRRSRTLNV PLFEDMPKGI NVAREMTCAA  720
KTGTRAERLE HKPVVRDSFS MPQQYRADGE TDKIKKNGEQ SLPSCSSMTD CSGGSASSDG  780
TFKSFKSQSV NESNTAIVVK AAYKNDTIRF KLLPSVKYEQ LLEEIVKRLK LSVGTFQLKY  840
KDDEGDWVIL ASDADLQECL DILDTTMLHI LKLQVQDVLC PTGSSSGSCS MLGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G07920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648590.0AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616880.10.0protein NLP2-like isoform X1
RefseqXP_015616881.10.0protein NLP2-like isoform X1
TrEMBLA0A0D9XR130.0A0A0D9XR13_9ORYZ; Uncharacterized protein
STRINGLPERR11G07920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein