PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G07170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 327aa    MW: 34673.5 Da    PI: 8.8411
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G07170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-3193146357
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                      ++rY+eClkNhAa++Gg+a+DGCgEfmp+ g++g+ +alkC+ACgCHRnFHR++ 
  LPERR11G07170.1  93 TARYRECLKNHAAAMGGNATDGCGEFMPA-GDDGSLDALKCSACGCHRNFHRKDI 146
                      689*************************9.999*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.1E-2894145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-2995145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2195145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.36696145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.65E-21213287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-31216288IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-27226282IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDLSGTQGEL PIPMHAAAAA GHVMELHHHD HVNNNGGGQA HQASMASPPH AAVAAAPPEQ  60
EISPAKKRGG GMNSSMNMVM VAAGGGGAAS PATARYRECL KNHAAAMGGN ATDGCGEFMP  120
AGDDGSLDAL KCSACGCHRN FHRKDIIFFS ADEFPSAAAG RHYFHHKNGG AGGDPYAAAR  180
ALPPPHHHQI IMPLSMIHTS ESDEMDGIAR GGGGAMGGGS SSSTGKKRFR TKFTAEQKAR  240
MLEFAERVGW RLQRLDDAMV QRFCGEIGVK RRVLKVWMHN NKHNLAKKPL PASPPEMAPP  300
QMPPSPPPMP LLPMQPPSPQ QQQLKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-252262841775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G07170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179853.11e-100zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N879e-94ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A0D9XQR10.0A0A0D9XQR1_9ORYZ; Uncharacterized protein
STRINGLPERR11G07170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.15e-61homeobox protein 21