PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G05690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 277aa    MW: 30202.8 Da    PI: 10.6676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G05690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172772147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  LPERR11G05690.1 27 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 72
                     899*****************************.***********996 PP
2Myb_DNA-binding63.34.7e-2080123247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l++a++ +G++ W++Iar+++ gRt++ +k++w+ +
  LPERR11G05690.1  80 RPFTEEEEERLLQAHRHHGNK-WALIARHFP-GRTDNAVKNHWHVV 123
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1162273IPR017930Myb domain
SuperFamilySSF466891.09E-3025120IPR009057Homeodomain-like
SMARTSM007172.1E-142675IPR001005SANT/Myb domain
PfamPF002498.5E-172772IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-272880IPR009057Homeodomain-like
CDDcd001671.87E-143071No hitNo description
PROSITE profilePS5129429.22174128IPR017930Myb domain
SMARTSM007175.3E-1778126IPR001005SANT/Myb domain
PfamPF002491.9E-1779122IPR001005SANT/Myb domain
CDDcd001671.22E-1481121No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2281123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASSTTTTTT TNTSDSAKPA SSSSCPRGHW RPGEDEKLRQ LVEKYGPQNW NSIAEKLEGR  60
SGKSCRLRWF NQLDPRINKR PFTEEEEERL LQAHRHHGNK WALIARHFPG RTDNAVKNHW  120
HVVRARRSRE RSRLLARSAA AASISPLGGA GATHHLDFAS PSLCFGFGGG VSSSMMMING  180
DSASSSSSQL TAANNRRPYP SPLFRSFAGG GSKKMMMTAA PAVDQSTITF ASPPPPKRET  240
LELMMMEHGH RENGGGDGVD GGERKGVPFF DFLGVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-3127120497C-Myb DNA-Binding Domain
1msf_C5e-3127120497C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G05690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235231e-100AC123523.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051P13, complete sequence.
GenBankAF1722821e-100AF172282.1 Oryza sativa adh1-adh2 region.
GenBankAP0149671e-100AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-100CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615875.11e-84transcription factor CSA-like
TrEMBLA0A0D9XQ740.0A0A0D9XQ74_9ORYZ; Uncharacterized protein
STRINGLPERR11G05690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-58myb domain protein 52