PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G04310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36311.9 Da PI: 8.6294 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k G g+W++ ++ g+ R++k+c++rw +yl LPERR11G04310.1 14 KGAWTKEEDQRLIAYIKANGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.3e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ LPERR11G04310.1 67 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.466 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.04E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.51 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-14 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:1903086 | Biological Process | negative regulation of sinapate ester biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK ANGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHELLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLNRG 120 VDPQTHRPLN AAADHHQQQL QASQPRFTAA APAGHHHDHF AILSNSPDAC SNSSDDEPSS 180 ATPPPPRHLG IDLNLSISLA PYQPEQENHP MKKEEDETAA MTASGAGNAT TTKVCLCLNR 240 LGLHGGEVCS CGRGGAPSMK ASTHMFRFIT PLGGASAIVI IMIYRSSGER EEIRRGNGEH 300 VGRRDGRDVN EGDKVPSRKG HGLRSFCNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00479 | DAP | Transfer from AT4G38620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G04310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063027 | 1e-126 | AK063027.1 Oryza sativa Japonica Group cDNA clone:001-110-B12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615594.1 | 1e-153 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-91 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A0D9XPP7 | 0.0 | A0A0D9XPP7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G04310.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-92 | myb domain protein 4 |