PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G04100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 378aa MW: 38646.6 Da PI: 8.0741 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.7 | 2e-42 | 95 | 233 | 2 | 125 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +ss+++ s ++a +s LPERR11G04100.1 95 PAAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSSSAAASPRAAPPSF 188 6789*****************************************************************9997777777777655555555555 PP TCP 95 akskksqksaasalnlakesr..............akarararer 125 +++ + + aa++l + ++++ a + +r+r+r LPERR11G04100.1 189 HHQFQHDVAAAAMLGFPHHHHhhllaqppphqdpgAGEFMRKRYR 233 566666666677999999777577777777777775555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.349 | 101 | 155 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-37 | 101 | 196 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEQQAAGGAA PSSSTSNSTN SSRSTSDHHA AAAAQHHHHA FYYAGAPAAG ATMPAPASFM 60 GSLAMVPSSA PAPAAAQVQA VEPESQKKAA LVAAPAAKRP TKDRHTKVEG RGRRIRMPAL 120 CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV SLRSSSAAAS 180 PRAAPPSFHH QFQHDVAAAA MLGFPHHHHH HLLAQPPPHQ DPGAGEFMRK RYREGGADDL 240 FKDNAAAASR HEDTDGGGGG ENEQKARAAA APPASPMWAV GPNTGGGGGG GAAFWMQPAW 300 AFAGGGNTVQ APLQFMTRSA FAGAVTMADN NNNSSSSNLG MLAALNAGGE QQQEGQPPEM 360 DHHRRANGGG GGGAASPQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G04100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616519.1 | 1e-102 | transcription factor PCF3 | ||||
Swissprot | Q53PH2 | 1e-103 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | A0A0D9XPL8 | 0.0 | A0A0D9XPL8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G04100.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 9e-39 | TCP family protein |