PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 280aa    MW: 31433.9 Da    PI: 7.9612
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.56.2e-2937123186
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k ltpsdv+k++rlv+pk++ae++   gg+k  +  l++ede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++ +
  LPERR11G03050.1  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplGGDK--GLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERAH 123
                      99*************************998885..568************************************************653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3931144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-2834124IPR015300DNA-binding pseudobarrel domain
CDDcd100178.12E-2835121No hitNo description
PROSITE profilePS5086313.25337139IPR003340B3 DNA binding domain
PfamPF023622.3E-2637124IPR003340B3 DNA binding domain
SMARTSM010191.0E-2037139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAMNSLFSQE HPQAWPWGVA MYANFHYHHQ YEKEHMFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLGGDKG LILSFEDEAG APWRFRYSYW TSSQSYVLTK GWSRYVKEKR LDAGDVVHFE  120
RAHGSFGAGD RLFIGCRRRG DSAAQTRAPP PAAARAQNAG EQQPCSPMCY STSGSYPTSP  180
ANSCYAYRRV ADQHDHSDMH HAEEPPRDTD SRSPSFSGGS APSRRLRLFG VNLDCGPEPE  240
ADTTAAATMY GYMHQQSSYT AMSAVPSYWF VLTSNTTKNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-50321393113B3 domain-containing transcription factor NGA1
5os9_B3e-50321393113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662746.11e-160PREDICTED: B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-155Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0D9XP800.0A0A0D9XP80_9ORYZ; Uncharacterized protein
STRINGLPERR11G03050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.12e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]