PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR11G02950.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 263aa MW: 28419.7 Da PI: 6.9024

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G02950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.4	3.2e-41	24	154	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrF Pt+eel+++yL+++++g++ ++++vi+ vd+y ++P++L +++ a ++++w+fF++r+ ++ +g r+ r+t sgyWkatg+ ++ LPERR11G02950.1 24 PPGFRFYPTEEELLTFYLRHRLAGTRhDDIARVIPVVDVYAFHPSQLAAMAGArDTEQWFFFCPRADRELHGGRPARTTPSGYWKATGSPSCIF 117 9********************9994556778**********95555525559********************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ + +++g+k+t+vfy+grap+g+kt+W m+ey++ LPERR11G02950.1 118 SAagGCRVIGVKRTMVFYEGRAPTGSKTRWKMNEYKA 154 9766678**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-47	18	179	IPR003441	NAC domain
PROSITE profile	PS51005	47.306	23	180	IPR003441	NAC domain
Pfam	PF02365	3.6E-23	24	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MISSRSISSS NGEITISNQS ATAPPGFRFY PTEEELLTFY LRHRLAGTRH DDIARVIPVV 60 DVYAFHPSQL AAMAGARDTE QWFFFCPRAD RELHGGRPAR TTPSGYWKAT GSPSCIFSAA 120 GGCRVIGVKR TMVFYEGRAP TGSKTRWKMN EYKAVAEDGD GGGGEMRVRN EMGVCRVYIS 180 TGTLRSFDRR PLINQTAAKV NSRDSSSTSG SREVAGGGEE GCCEDDVIDW NSLIGSATAA 240 DDFGISSGGV GFDASIIGPW PYV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-32	22	178	16	163	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-32	22	178	16	163	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-32	22	178	16	163	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-32	22	178	16	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-32	22	178	19	166	NAC domain-containing protein 19
3swm_B	6e-32	22	178	19	166	NAC domain-containing protein 19
3swm_C	6e-32	22	178	19	166	NAC domain-containing protein 19
3swm_D	6e-32	22	178	19	166	NAC domain-containing protein 19
3swp_A	6e-32	22	178	19	166	NAC domain-containing protein 19
3swp_B	6e-32	22	178	19	166	NAC domain-containing protein 19
3swp_C	6e-32	22	178	19	166	NAC domain-containing protein 19
3swp_D	6e-32	22	178	19	166	NAC domain-containing protein 19
4dul_A	6e-32	22	178	16	163	NAC domain-containing protein 19
4dul_B	6e-32	22	178	16	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G02950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615861.1	1e-106	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9XP67	0.0	A0A0D9XP67_9ORYZ; Uncharacterized protein
STRING	LPERR11G02950.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-66	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]