PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G02180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 395aa    MW: 43731.5 Da    PI: 4.3836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G02180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.21.3e-2251361126
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkya...tgkrknratk..sgy 82 
                      +ppGfrF+Pt eel+++yL++ ++g+++e+ +  + ++d+y ++P +L +      +v +++k wyf s ++ k +   +  r+nr ++   g 
  LPERR11G02180.1   5 VPPGFRFEPTHEELISDYLNHWITGRPIEELHGiVVKADVYGTDPGTLTQaheeyaHVGKTTKAWYFLSVAKWKGNkrgNAGRNNRCIDgdLGN 98 
                      69*************************88866548899**********85467665555577799**998776655222666999966545899 PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      W+++ + k+v+       g ++ + + +g+++k  kt+W+m+e 
  LPERR11G02180.1  99 WHNSQRRKAVHG-----FGERQAFEYRTGEHNK-DKTEWLMEEL 136
                      *****9999988.....99*******9998888.8*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-224158IPR003441NAC domain
PROSITE profilePS5100525.4845158IPR003441NAC domain
PfamPF023657.1E-156135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDVKVPPGFR FEPTHEELIS DYLNHWITGR PIEELHGIVV KADVYGTDPG TLTQAHEEYA  60
HVGKTTKAWY FLSVAKWKGN KRGNAGRNNR CIDGDLGNWH NSQRRKAVHG FGERQAFEYR  120
TGEHNKDKTE WLMEELMSNL PAAITDEGTM VICKVYKSPR KNKGDENVVG KKRLRLGQQH  180
ESAADETSDQ AATALTEFYC PTTTHTSGDA SNNVNYNDYS ADFATIKPED YDNNNYGNGN  240
GNFANNTQAA EPSYDADCYN DFLMNTDMAE SGYDAGYYGE AGIGAGAEMV PLAMQSSNGE  300
MTYFVVDTMY GQGNGVISNE EARQESEMPL AIQDSNGENT NFAPMYGHDH GVGGSNEEMR  360
QESRVEDDPS MDAFLDSLFA DVGNDNPNPN LDGHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G02180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XNX60.0A0A0D9XNX6_9ORYZ; Uncharacterized protein
STRINGLPERR11G02180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.14e-11vascular related NAC-domain protein 7