PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR11G01300.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 323aa MW: 36176.3 Da PI: 6.6406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G01300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	5.8e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL +++++ +++ +i+ev+iyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls LPERR11G01300.1 14 LPPGFRFHPTDEELIVHYLMNQTSSIACPV-PIIAEVNIYKCNPWDLPGKALFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILS 106 79*************************9.88***********8777899**********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl LPERR11G01300.1 107 SpTSDHIGVKKALVFYKGKPPKGTKTDWIMHEYRL 141 988889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-64	9	175	IPR003441	NAC domain
PROSITE profile	PS51005	59.081	14	175	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRMPSSSNEA MPALPPGFRF HPTDEELIVH YLMNQTSSIA CPVPIIAEVN IYKCNPWDLP 60 GKALFGEKEW YFFSPRDRKY PNGARPNRAA GSGYWKATGT DKAILSSPTS DHIGVKKALV 120 FYKGKPPKGT KTDWIMHEYR LTGTSTNNNS STKQRRASTM NMRLDDWVLC RIHKKSNDFS 180 DQQEQEPEGS TVDQLEEIHE NNSSETPAPA DMNNEHSAFH PMMMSMSKSC SLTDLLNTID 240 CAALSQFLLD GSSESAEPTA PPCPLIYNDP CQSLNYNLNN NMPHAFDARQ DHHADGHVKN 300 YNGLRRKRMM ACSSGVTSFD DGX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-72	9	180	10	173	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G01300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615093.1	0.0	NAC transcription factor 29
Swissprot	Q8H4S4	3e-83	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A0D9XNL2	0.0	A0A0D9XNL2_9ORYZ; Uncharacterized protein
STRING	LPERR11G01300.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	7e-82	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]