PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 334aa    MW: 37006.8 Da    PI: 7.5824
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.3e-3161114255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH++Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  LPERR11G00400.1  61 PRLRWTPELHHCFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 114
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-3057115IPR009057Homeodomain-like
PROSITE profilePS5129413.03557117IPR017930Myb domain
SuperFamilySSF466891.58E-1558115IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2360116IPR006447Myb domain, plants
PfamPF002495.4E-962113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGKKEEEEGS DQSNTDGGGA PAANNNNWSS TTSTSTVEEE EGQQGERSSS SVRPYVRSKN  60
PRLRWTPELH HCFVRAVDRL GGQDRATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDES  120
GQVIVGGCSW RSDEQQQQYH HLQMQGGHGG QAYNVGHLSL PAALHQHHRH ITAGAGTTVL  180
QSRFGNAWSP WRCHGHGSYP WLRAGHHLPV GSKPYYPPAA EAESPFHSSD RYVARAPSSH  240
LEDFVQASSS SRGDHIMNHQ RSILKKIICN EDGNHQEEGA LNLDLTLDIG PRREKRKREC  300
SWKKQEGDHD HTTIAIGGDQ EAESCATGLS LSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291298RREKRKRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072971e-140AK107297.1 Oryza sativa Japonica Group cDNA clone:002-126-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617115.11e-140probable transcription factor RL9 isoform X1
TrEMBLA0A0D9XN780.0A0A0D9XN78_9ORYZ; Uncharacterized protein
STRINGLPERR11G00400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-31G2-like family protein