PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G15090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 35420.9 Da PI: 6.2528 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.3e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ LPERR10G15090.1 6 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDRKI 98 79****************************.99**************95334445667************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + g + gl+ktLvfykgrap ge+tdWvmheyrl LPERR10G15090.1 99 AC-AGDVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 133 **.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-61 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.874 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGTMTLPPGF RFHPTDDELV GYYLKRKVDN LKIELEVIPV IDLYKFEPWE LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC AGDVFGLRKT LVFYKGRAPG 120 GERTDWVMHE YRLCQDLAHG VSNFMGAYAL CRVIKRHEAG LNGEPPAAKA AARTMSKVSS 180 SSSLVTVDHQ QMIGRTSNAN TSPFTPPTST NVSDLDDMFQ QIQSCVTPYS GFDLPPPMPQ 240 DMFFSGAGGF PARQDFYGEA MGTSVSEHEL KWDNLAGVGG GGGETWNTAA ASTLLCRQAS 300 DGDDLTAWFA AVADDNMSVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 1 | 160 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 1 | 160 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G15090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833246 | 0.0 | CT833246.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI238F12, full insert sequence. | |||
GenBank | CT833247 | 0.0 | CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612876.1 | 1e-164 | NAC domain-containing protein 71 | ||||
TrEMBL | A0A0D9XMS2 | 0.0 | A0A0D9XMS2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G15090.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 2e-85 | NAC domain containing protein 71 |