PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family STAT
Protein Properties Length: 628aa    MW: 69778.8 Da    PI: 5.9297
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.51.6e-581983161119
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+vvl++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e++++drpl+++rGra+fklkisqLsskcdn+Lfri+f++++++
  LPERR10G14860.1 198 LEVVLIDAFGESA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGLEYPAVDRPLPIIRGRALFKLKISQLSSKCDNKLFRIYFSTLDVR 290
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssl 119
                      kypflea+skpirCisrsr++r++++
  LPERR10G14860.1 291 KYPFLEAYSKPIRCISRSRTSRPLGS 316
                      **********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.42E-534173IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.103.9E-4543611IPR000980SH2 domain
SuperFamilySSF555502.02E-6544613IPR000980SH2 domain
PROSITE profilePS500019.633552628IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAAAAAGCGG GDGYCELRDF RFELDLRKAR GGGEGGFTVC FWLYLSRSAR PSSVILNQIA  60
GGGGDKVPFL ALGEGNKLLL FPLMGFHREA PTPDSSYPWT DITKLTEANE CPLENWFHVG  120
CEVAENIMRL HIDGDLVAEA HLRPLYDEPD YQNGANQINL LGSKDKLEGY VYNMVVSSML  180
GNIQQQYAKA SCRRNFILEV VLIDAFGESA KDREIVASLV YADNGALVEK SRDDSEPPLL  240
ISCDGLEYPA VDRPLPIIRG RALFKLKISQ LSSKCDNKLF RIYFSTLDVR KYPFLEAYSK  300
PIRCISRSRT SRPLGSGKQI GSASMDEIPS INNGEGHNGK ENGRVQTYNP SSTNKEERKM  360
VLDKGAHDVM GFDSTASDSD SMDAGSSWSG SDGDEVESFS DTEVFRYCLD GTYERSKFLR  420
AAAPSVNEDD LVKLANQVSL YSGCTHHRNQ IVMSKQLLQM GADAWSIISK NNEHALWSSA  480
VPEIKAKFLD IVHISNRGLS EQDLEVLRGI AGCGDDIGRD EFDKLWSWLY PVAVALSKNK  540
INKLWDLTTH RWIEGLITLE EAENALRKSR ERLKKPGTFV LRFPTTRSWP HPDAGSLVVT  600
YVGSDNSIHH RLLSFDVRVD RMPSSMQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614085.10.0SH2 domain-containing protein A isoform X2
TrEMBLA0A0D9XMP00.0A0A0D9XMP0_9ORYZ; Uncharacterized protein
STRINGLPERR10G14860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-139SH2 domain protein B