PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 312aa    MW: 32369.5 Da    PI: 4.9052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-1777126255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a+++++g
  LPERR10G14320.1  77 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDVAALAIKG 126
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3577140IPR001471AP2/ERF domain
PfamPF008471.1E-1177126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3177135IPR001471AP2/ERF domain
PROSITE profilePS5103223.0977134IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2177135IPR016177DNA-binding domain
CDDcd000182.59E-2978136No hitNo description
PRINTSPR003674.4E-107889IPR001471AP2/ERF domain
PRINTSPR003674.4E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAMAHELQET SSSSSSSATS TSSSCSSAVT DASSSPSPAR LSNAAVAGAG GGGKRKKKLE  60
EETKKKRKRS SEGKHPTYRG VRMRAWGKWV SEIREPRKKS RIWLGTFPTA DMAARAHDVA  120
ALAIKGRAAH LNFPHLAAVL PRAASADPKD VQAAASLAAS FSTSPQDAGD AADEHLAGAA  180
FRASPTSPFS SEDVAHADEH LADAAFRASP SSSEADGVAP CDGHADEHLA GAAKNDENDC  240
AATPSSAGGD GDGEAAAEEA EQQLFDLPDL LFDIHDVAAF GFPAMWAPLA DEVNAELRLE  300
EPLLWDLGVA DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-18751351273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15468RKKKLEEETKKKRKR
26469KKRKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798745e-94AC079874.21 Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence.
GenBankAP0149665e-94AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.11e-82ethylene-responsive transcription factor ERF038
TrEMBLA0A0D9XMF80.0A0A0D9XMF8_9ORYZ; Uncharacterized protein
STRINGLPERR10G14320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-31ERF family protein