PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G13190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 296aa    MW: 31978.2 Da    PI: 8.3208
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G13190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.8e-322679255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  LPERR10G13190.1 26 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 79
                     8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-302280IPR009057Homeodomain-like
PROSITE profilePS5129412.9452282IPR017930Myb domain
SuperFamilySSF466891.68E-152480IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-242679IPR006447Myb domain, plants
PfamPF002495.1E-102778IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAMVRGSMVR RERIEGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQHK ATPKRVLQLM  60
GVGGLTISHV KSHLQMYRNM SNDDLGMQGI QQMDQEQTFA GGMQVWTDMQ HYECDGPLNC  120
RCHSSSKHAK GSLLLLPHHQ QQLLQRPNQM ETTQAGSVRS QGGGVVGGGI CEIDVSSGLA  180
VDTAQAAASY YTQLQHQHGP PPAGAGHDAA APPPISTPRL LGVVVMTTWL RGSRQEHDVS  240
PPPANGDELS LSLTLDSGLM SCRSSSGSSW LSSPSTSFSG GGCTTMRDSV SLDLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-172778354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-172778354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-172778354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-172778354Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G13190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516333e-64AC051633.7 Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence.
GenBankAC0731663e-64AC073166.7 Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence, complete sequence.
GenBankAP0149663e-64AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126183e-64CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876554.11e-116uncharacterized protein LOC112936623 isoform X1
TrEMBLA0A0D9XM030.0A0A0D9XM03_9ORYZ; Uncharacterized protein
STRINGLPERR10G13190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.15e-30G2-like family protein