PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G12880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TALE | ||||||||
Protein Properties | Length: 560aa MW: 59567.1 Da PI: 7.0223 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.8e-09 | 339 | 376 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV +WF N R + LPERR10G12880.1 339 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 376 664459******************************88 PP | |||||||
2 | BELL | 90.4 | 1.8e-29 | 202 | 272 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elq+ k kL ++leeVd+rY++y++q++++ +sFeavag +a+ Yt+lA+++iS+hFr+L+d ++ q+ LPERR10G12880.1 202 AAELQRLKGKLYTMLEEVDRRYRRYCDQMRALSGSFEAVAGERAAAAYTRLASRTISKHFRSLRDGVVAQL 272 5799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.2E-42 | 135 | 270 | IPR006563 | POX domain |
Pfam | PF07526 | 3.1E-42 | 141 | 268 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 317 | 380 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-9 | 320 | 384 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.00E-12 | 320 | 381 | No hit | No description |
SuperFamily | SSF46689 | 3.59E-17 | 321 | 387 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 323 | 386 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-17 | 337 | 376 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MAHDPSLGYA DYFAAEVVVD GGGAGAGETE LYGLHQHQHH GVAEMFGHGN KGGLGALVVG 60 GGVDDGGATV HHFGGLGELH HRQQQSQAPL SLSLHRPETA AAATSLLMQQ QQNHHHHQQQ 120 PSAAAAWQLQ QHQGGAGAWH LRSSRFLLPT QQLLQEFCSL PVKSTTSPSA AASKAAKAAQ 180 EDGGGGGSSS WTAPTQIQSM DAAELQRLKG KLYTMLEEVD RRYRRYCDQM RALSGSFEAV 240 AGERAAAAYT RLASRTISKH FRSLRDGVVA QLQAVRKQLG EKDTAVPGMT KGETPRLRVL 300 DQCLRQHKAY QAGMLESHPW RPQRGLPERA VSILRAWLFE HFLHPYPSDV DKHILARQTG 360 LSRSQVANWF INARVRLWKP MVEEMYAEEM KDEDGGGSGP QSQASNPQNP NPSSYTSEDR 420 GEQKPSRTQL LHDAGSLASV VSIGGGHHHH QSINFGMMDQ LDFDAYEAAA AAGGQGFGGG 480 GAGGVSLTLG LQQQHADAHD GVNVAAFAAA APASAGAGGA AEYLFMAGGG GEHQHQQLPP 540 GAAHAQFAGA GFHLLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 326 | 383 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 326 | 383 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G12880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614125.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0D9XLV9 | 0.0 | A0A0D9XLV9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G12880.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 2e-81 | TALE family protein |