PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G12880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 560aa    MW: 59567.1 Da    PI: 7.0223
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G12880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-093393761954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV +WF N R +
  LPERR10G12880.1 339 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 376
                      664459******************************88 PP
2BELL90.41.8e-29202272272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +elq+ k kL ++leeVd+rY++y++q++++ +sFeavag  +a+ Yt+lA+++iS+hFr+L+d ++ q+
  LPERR10G12880.1 202 AAELQRLKGKLYTMLEEVDRRYRRYCDQMRALSGSFEAVAGERAAAAYTRLASRTISKHFRSLRDGVVAQL 272
                      5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-42135270IPR006563POX domain
PfamPF075263.1E-42141268IPR006563POX domain
PROSITE profilePS5007112.001317380IPR001356Homeobox domain
SMARTSM003895.2E-9320384IPR001356Homeobox domain
CDDcd000868.00E-12320381No hitNo description
SuperFamilySSF466893.59E-17321387IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27323386IPR009057Homeodomain-like
PfamPF059202.1E-17337376IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVVVD GGGAGAGETE LYGLHQHQHH GVAEMFGHGN KGGLGALVVG  60
GGVDDGGATV HHFGGLGELH HRQQQSQAPL SLSLHRPETA AAATSLLMQQ QQNHHHHQQQ  120
PSAAAAWQLQ QHQGGAGAWH LRSSRFLLPT QQLLQEFCSL PVKSTTSPSA AASKAAKAAQ  180
EDGGGGGSSS WTAPTQIQSM DAAELQRLKG KLYTMLEEVD RRYRRYCDQM RALSGSFEAV  240
AGERAAAAYT RLASRTISKH FRSLRDGVVA QLQAVRKQLG EKDTAVPGMT KGETPRLRVL  300
DQCLRQHKAY QAGMLESHPW RPQRGLPERA VSILRAWLFE HFLHPYPSDV DKHILARQTG  360
LSRSQVANWF INARVRLWKP MVEEMYAEEM KDEDGGGSGP QSQASNPQNP NPSSYTSEDR  420
GEQKPSRTQL LHDAGSLASV VSIGGGHHHH QSINFGMMDQ LDFDAYEAAA AAGGQGFGGG  480
GAGGVSLTLG LQQQHADAHD GVNVAAFAAA APASAGAGGA AEYLFMAGGG GEHQHQQLPP  540
GAAHAQFAGA GFHLLHDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16326383158Homeobox protein Meis1
4xrs_B1e-16326383158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G12880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0D9XLV90.0A0A0D9XLV9_9ORYZ; Uncharacterized protein
STRINGLPERR10G12880.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-81TALE family protein