PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G12070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 540aa    MW: 57418 Da    PI: 8.705
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G12070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.33.6e-221691787
         trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                     m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  LPERR10G12070.1  1 MDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFSQLEA 69
                     67899************************************************97..56668*******85 PP
2trihelix111.74.5e-35356441187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  LPERR10G12070.1 356 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 441
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.06E-16149No hitNo description
PfamPF138378.6E-16470No hitNo description
PROSITE profilePS500904.9481542IPR017877Myb-like domain
SMARTSM007170.006215415IPR001005SANT/Myb domain
PROSITE profilePS500907.399349413IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-4354412IPR009057Homeodomain-like
PfamPF138374.3E-24355442No hitNo description
CDDcd122032.28E-26356420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDAAFRDATL KGPLWEEVSR KLAEEGYRRS AKKCKEKFEN VHKYYKRTKE SRAGRNDGKT  60
YRFFSQLEAL HGTAAGGATA APAPVTSLAP PATALRAPAE PPPVVAPPPL PAMGTTNMMS  120
FSTSNTEEYS DEEEDDDDDS DDDGTEDIGG GGDERGKRKR VSEGGAGAAG AGTGGGGKMM  180
RFFEGLMKQV MERQEAMQQR FLEAIEKREQ DRMIREEAWR RQEMARLARE QEILAQERAM  240
AASRDAAVVS FIQKITGQTI PMPPPPIPAP AITIIPPPSQ PPPPPPPSQQ APPPPPSQPS  300
PSPSPQTTKS QLTPTPTPTQ QQHHQNQHQH DIVMTPAGGD HDGSGGGGGG QASSSRWPKA  360
EVHALIQLRS NLDNRYQEAG PKGPLWEEIS AGMRRMGYSR SSKRCKEKWE NINKYFKKVK  420
ESNKKRPEDS KTCPYFHQLD ALYRNKAALN ASSGGGAAAA LPPPDHTDPA PATTAVTVAA  480
PISQTPPATT SATTNGGGAA DGGGGSGGMQ VTASNGSVVA GGGGKFFTGT AAAKKVSELS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G12070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126184e-90CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167728.10.0uncharacterized protein LOC100381416
RefseqXP_008643913.10.0uncharacterized protein LOC100381416 isoform X1
TrEMBLA0A0D9XLJ50.0A0A0D9XLJ5_9ORYZ; Uncharacterized protein
STRINGLPERR10G12070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-50Trihelix family protein