PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G10860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Dof | ||||||||
Protein Properties | Length: 236aa MW: 24220.2 Da PI: 9.1006 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 103.9 | 9.4e-33 | 76 | 132 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++ k++ LPERR10G10860.1 76 PRQCPRCGSSNTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNTKRA 132 679***********************************************9988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-30 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.487 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-23 | 82 | 131 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSSPFIASSA SSSAPLSYLT PPRPPPPPLL MGQGYGAVDG GFGVPDTGVD AVNVVAPAVR 60 QSGRHAGHPP LPRPPPRQCP RCGSSNTKFC YYNNYSRTQP RYLCKACRRH WTEGGTLRDV 120 PVGGGRKNTK RAPSAAAKAK AAAASVASSS SATSSFPDIL RQMLFSPAAA TGGGGGYSID 180 MAAWQQMAAF AGTPDQGGVC DVGGVVGGTA AAADCGGVQY WNGWLQDDMP GLDRSC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G10860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070563 | 1e-91 | AK070563.1 Oryza sativa Japonica Group cDNA clone:J023060H13, full insert sequence. | |||
GenBank | AK109091 | 1e-91 | AK109091.1 Oryza sativa Japonica Group cDNA clone:002-155-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614315.1 | 2e-56 | dof zinc finger protein 1-like | ||||
TrEMBL | A0A0D9XL26 | 1e-169 | A0A0D9XL26_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G10860.1 | 1e-170 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-23 | Dof family protein |