PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G10860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 236aa    MW: 24220.2 Da    PI: 9.1006
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G10860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof103.99.4e-3376132561
           zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                       ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++ k++
  LPERR10G10860.1  76 PRQCPRCGSSNTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNTKRA 132
                      679***********************************************9988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.5E-3077131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.48777131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-2382131IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSSPFIASSA SSSAPLSYLT PPRPPPPPLL MGQGYGAVDG GFGVPDTGVD AVNVVAPAVR  60
QSGRHAGHPP LPRPPPRQCP RCGSSNTKFC YYNNYSRTQP RYLCKACRRH WTEGGTLRDV  120
PVGGGRKNTK RAPSAAAKAK AAAASVASSS SATSSFPDIL RQMLFSPAAA TGGGGGYSID  180
MAAWQQMAAF AGTPDQGGVC DVGGVVGGTA AAADCGGVQY WNGWLQDDMP GLDRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G10860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705631e-91AK070563.1 Oryza sativa Japonica Group cDNA clone:J023060H13, full insert sequence.
GenBankAK1090911e-91AK109091.1 Oryza sativa Japonica Group cDNA clone:002-155-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614315.12e-56dof zinc finger protein 1-like
TrEMBLA0A0D9XL261e-169A0A0D9XL26_9ORYZ; Uncharacterized protein
STRINGLPERR10G10860.11e-170(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.14e-23Dof family protein