PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G09970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 707aa    MW: 77074.5 Da    PI: 7.9397
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G09970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23140241199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  LPERR10G09970.1 140 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 229
                      89****************************996555555..8999*********************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  LPERR10G09970.1 230 RVGELCVGIRRA 241
                      79999****997 PP
2Auxin_resp117.31.3e-38297380183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++Fev Y+Prast+eFvvk+ +v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  LPERR10G09970.1 297 AASLAANGQPFEVAYYPRASTPEFVVKATSVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 380
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-36134243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-28136243IPR015300DNA-binding pseudobarrel domain
CDDcd100175.96E-21139240No hitNo description
SMARTSM010191.2E-21140242IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675140242IPR003340B3 DNA binding domain
PfamPF023622.0E-21140241IPR003340B3 DNA binding domain
PfamPF065071.5E-33297380IPR010525Auxin response factor
PROSITE profilePS5174518.807612690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEEERCLDPQ LWHACAGGMV QMPAARSRVY YFAQGHAEHA NGGGAAAELA AAAPRALRRN  60
EWYKKGNYGE ALRHXRALPP LVLCRVDGVR FLADPDTDEV FAKIRLSPVS PAEVDFRDSP  120
EQLCPLAGGD GESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV  180
LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR VGELCVGIRR  240
AKRVACGGME CMSGWNAPGY GGFSAFLKEE ESKLMKGAGG GYMRGRGKVK IADVVEAASL  300
AANGQPFEVA YYPRASTPEF VVKATSVQAA MRIQWCSGMR FKMAFETEDS SRISWFMGTI  360
SSVQVADPNR WPNSPWRLLQ VTWDEPDLLQ NVKCVSPWLV ELVSSIPPIH LGPFSPPRKK  420
LRVPPHPDFP FEGHLLNPIF HGNPLGPSNS PLCCYPDTAP AGIQGARHAQ FGLPLTDHQL  480
NKLHLGLFHG GSFNRLDAIT PPSRISKGFV VSTAPAHDNV PCLLSIGTPQ STEKSDDRKT  540
TPHIMLFGKA IFADQQITSS RSLETLSPGV TANSSPNGNV QKAGNASDGS GSSICIGFSP  600
HGRGASDLGL EAGHCKVFME SEDVGRTIDL SVFGSYEELY GRLADMFGIE KEEIINHLHY  660
RDAAGVVKHT GEVPFGDFMK VARRLTIIAG DGGRIERPLI QCLVEQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-75740551392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G09970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186170.0AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614842.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A0D9XKQ10.0A0A0D9XKQ1_9ORYZ; Auxin response factor
STRINGLPERR10G09970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]