PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G09740.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 22374 Da PI: 4.6368 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.6 | 5.7e-11 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktLvfy grap+g+kt+Wvmhe+rle LPERR10G09740.2 1 MRKTLVFYLGRAPNGHKTTWVMHEFRLE 28 89***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.451 | 1 | 46 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-15 | 1 | 46 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MRKTLVFYLG RAPNGHKTTW VMHEFRLETP NSQPKEDWVL CRVFDKKKPS STTEAEQGSD 60 IFITNTGGSI DPSSPTMTTA PLLGSSPDPT VVDRFDHQST VLEPSMLLMQ GGGDHMIAGN 120 NNHCSNSALL NLAMLQYNFV DQPPGDDVAV GTHFDACHGG GDDATMALRM GLEEHGMGEI 180 IEIEPTWRQG GNNCLYRDEL YFQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G09740.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119558 | 7e-46 | AK119558.1 Oryza sativa Japonica Group cDNA clone:002-106-A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613250.1 | 1e-104 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A0D9XKL5 | 1e-151 | A0A0D9XKL5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9XKL6 | 1e-151 | A0A0D9XKL6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G09740.1 | 1e-151 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-22 | NAC domain containing protein 74 |