PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G09740.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 313aa MW: 34926.2 Da PI: 5.5647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G09740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.9	1e-49	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deelv++yL+ kv+++++ ++ +vd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v++ LPERR10G09740.1 10 LPPGFRFCPSDEELVCFYLRSKVANHRVAS-GTLVDVDLHAREPWELPEVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRIVHD 102 79***********************888.88***********87788899********************************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg++ktLvfy grap+g+kt+Wvmhe+rle LPERR10G09740.1 103 AaTRAVVGMRKTLVFYLGRAPNGHKTTWVMHEFRLE 138 877788*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	7	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	10	156	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGLREMESTL PPGFRFCPSD EELVCFYLRS KVANHRVASG TLVDVDLHAR EPWELPEVAK 60 LTAEEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRIV HDAATRAVVG MRKTLVFYLG 120 RAPNGHKTTW VMHEFRLETP NSQPKEDWVL CRVFDKKKPS STTEAEQGSD IFITNTGGSI 180 DPSSPTMTTA PLLGSSPDPT VVDRFDHQST VLEPSMLLMQ GGGDHMIAGN NNHCSNSALL 240 NLAMLQYNFV DQPPGDDVAV GTHFDACHGG GDDATMALRM GLEEHGMGEI IEIEPTWRQG 300 GNNCLYRDEL YFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-50	1	157	4	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-50	1	157	4	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-50	1	157	4	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-50	1	157	4	166	NO APICAL MERISTEM PROTEIN
4dul_A	6e-50	1	157	4	166	NAC domain-containing protein 19
4dul_B	6e-50	1	157	4	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G09740.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119558	1e-171	AK119558.1 Oryza sativa Japonica Group cDNA clone:002-106-A07, full insert sequence.
GenBank	CT834701	1e-171	CT834701.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115P09, full insert sequence.
GenBank	GQ229485	1e-171	GQ229485.1 Oryza sativa Japonica Group NAM-domain transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613250.1	0.0	protein CUP-SHAPED COTYLEDON 1
Swissprot	Q9S851	1e-58	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A0D9XKL5	0.0	A0A0D9XKL5_9ORYZ; Uncharacterized protein
STRING	LPERR10G09740.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-77	NAC domain containing protein 74

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]