PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 435aa    MW: 46397.7 Da    PI: 8.2234
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.22.1e-3993153262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ 
  LPERR10G06780.1  93 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKHAV 153
                      7899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3093150IPR003851Zinc finger, Dof-type
PfamPF027018.8E-3295151IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.57497151IPR003851Zinc finger, Dof-type
PROSITE patternPS01361099135IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGECRGGDGL IKLFGKTIPV APDVAKDLQQ QSGSSSSSTE SDIQETAAAI VGDPSPRSEV  60
DDGDDTATAK SSPPTTGGGS GEAAKEKEKL KKPDKILPCP RCSSMDTKFC YFNNYNVNQP  120
RHFCKHCQRY WTAGGAMRNV PVGAGRRKNK HAVSAASHHF LHRAAAVRAV DGLLNSNNGT  180
VLSFGAHDVA QPQPQPLAVD LTGQMTRLNK ERLIVDGEVS SNRDDQNYQS SSNTVAKPAI  240
GLQQQQHHPA TMNGWPYGCA PSPTYYTSGI AIPIYPAAAA LPAYWGCMIP PPPGAWTSLP  300
WPPAVQSQVI SSPSPTSAPS VSSSLPTLGK KHPREGGDEG RDGNDHGYNG KLWVPKTIRI  360
DNADEVARSS IRSLFGFRGG DKEDDDSTDT HKLSTTVFEA KRDGKTAKHP VIASLPLLHT  420
NPVALTRSAT FQEGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0218936e-82AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBankAP0149666e-82AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126186e-82CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615013.11e-166cyclic dof factor 1
TrEMBLA0A0D9XJJ00.0A0A0D9XJJ0_9ORYZ; Uncharacterized protein
STRINGLPERR10G06780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.25e-49cycling DOF factor 2