PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 355aa    MW: 39680.7 Da    PI: 6.4543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-16179225147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eE+ l++++ +++G g+Wk I+r++ ++Rt+ qc s+ qky
  LPERR10G06550.1 179 RVVWTKEEHRLFLEGMQEFGRGDWKNISRHFVTTRTAAQCSSHAQKY 225
                      678*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.658174230IPR017930Myb domain
SuperFamilySSF466891.79E-17175229IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-15178228IPR006447Myb domain, plants
SMARTSM007171.4E-12178228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-12179225IPR009057Homeodomain-like
PfamPF002496.2E-13179225IPR001005SANT/Myb domain
CDDcd001677.20E-11182226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGSIVIQGWT TSEIEEARSV ITRPNNGGNS GYDGDGDRNK KDHGDIVSEH QKWFPLKTLD  60
HVVNLYLNLI IGTSMVMPSS NKRDTDNIIQ VDGHVTSLAN GNTEMVEEEQ IMLNNEGLLF  120
DYPLEDIEMG NQTEQEVEID VQNEVDVQAR EALVTKEKEV EAPKIQTNCW HAASSTRRRV  180
VWTKEEHRLF LEGMQEFGRG DWKNISRHFV TTRTAAQCSS HAQKYFLKLA AEGKAAPPAP  240
KRRRFCYDWV AITGQQQAAA PAVAPVPTHG QWMHHPMSAS GFNNVYDQRL CLPPQVTNPI  300
FVPNHFAMPP LMYHHLPGGQ PVLPFPVPAG AAVHGSGQRA FAPQLPWMNS SKSMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.15e-82uncharacterized protein LOC107281238
TrEMBLA0A0D9XJG30.0A0A0D9XJG3_9ORYZ; Uncharacterized protein
STRINGLPERR10G06550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-19MYB family protein