PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06290.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 400aa    MW: 42709.5 Da    PI: 4.8478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.14.6e-16321492127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        G  F P+d el+   Lk k+ + +   +l++v+++++i++++P +              F++   ++ ++kr+ r+++ g+Wka+g +k+v 
  LPERR10G06290.1  32 EIGTYFVPKDLELLAI-LKCKLVRGQltAPLSNVFSDINILQFHPARA-------------FAT---NTGNKKRPIRVARGGTWKASGGSKTVR 108
                      6799**********66.66665555536677889***********986.............333...2345679******************** PP

              NAM  94 sk..kgelvglkktLvfy.....kgrapkgektdWvmheyr 127
                      sk  +g +vg k t+vfy      +++  ++kt+W mhe++
  LPERR10G06290.1 109 SKkvGGVDVGHKLTMVFYeklhdGADRAPPRKTNWGMHEFT 149
                      99888999**********6665313444458********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-2525172IPR003441NAC domain
PROSITE profilePS5100521.07331170IPR003441NAC domain
PfamPF023652.6E-1034149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSSYVPDGSI IISNEKKNKV EPEYGKNRHG LEIGTYFVPK DLELLAILKC KLVRGQLTAP  60
LSNVFSDINI LQFHPARAFA TNTGNKKRPI RVARGGTWKA SGGSKTVRSK KVGGVDVGHK  120
LTMVFYEKLH DGADRAPPRK TNWGMHEFTK IIPASKNKLE ELALYRLYKI KREDHDNGEQ  180
NEEPSTSSPM DHLSSAIVLA GSSLSMAMAQ LQQPPMSILA MAGAGGGMMM MSQLSAASTV  240
ANGGAAAAAA AFSLSPMQQQ QQLGGGFLTM MEADIDPMEP VLEVEPIAVI PPPPEPMMMP  300
ALLPATNGTE QKQSSPAPAP APSAMEEEVG DSHDNQQQQQ QGRQTADGAD CCGAMAIDGD  360
EQQCSPMASA ASAAADIELD DSLEIDFNLL FDDGTQISIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.18e-75NAC transcription factor NAM-B2
TrEMBLA0A0D9XJD10.0A0A0D9XJD1_9ORYZ; Uncharacterized protein
STRINGLPERR10G06290.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.15e-12NAC domain containing protein 19