PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G05960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 180aa    MW: 19307.6 Da    PI: 4.7869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G05960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.1e-1763112255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr +  +g+W+AeIrdp+    r  r++lg+f taeeAa a++  +++++g
  LPERR10G05960.1  63 RFRGVRKRA-WGKWAAEIRDPV----RgVRVWLGTFATAEEAAMAYDVEARRIRG 112
                      69****887.**********63....56************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-2563116IPR001471AP2/ERF domain
PfamPF008473.1E-1063112IPR001471AP2/ERF domain
SMARTSM003803.5E-2563123IPR001471AP2/ERF domain
CDDcd000185.72E-2363112No hitNo description
PROSITE profilePS5103220.79863121IPR001471AP2/ERF domain
PRINTSPR003671.6E-106475IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1864115IPR016177DNA-binding domain
PRINTSPR003671.6E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MCGGSILSDL IPVAKNKRPR RSDAAADDFE AAFEEFDAGD SSDEVGIILP PPRPIRRQGE  60
RVRFRGVRKR AWGKWAAEIR DPVRGVRVWL GTFATAEEAA MAYDVEARRI RGKKAKPAAA  120
AAEVFDTYDI DGGLASYFAD AAGSGYESLE SLFAGGGGGD AAEQWPVGLW SFAGDGSFCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1664115658ATERF1
3gcc_A8e-1664115658ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G05960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610476e-40AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670606e-40AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093606e-40AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
GenBankAP0043086e-40AP004308.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0552F09.
GenBankAP0049886e-40AP004988.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1056G08.
GenBankAP0149636e-40AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126156e-40CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686748.12e-31PREDICTED: ethylene-responsive transcription factor 1-like isoform X4
SwissprotP427367e-28RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0D9XJ911e-123A0A0D9XJ91_9ORYZ; Uncharacterized protein
STRINGLPERR10G05960.11e-124(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-21ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]