PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G05620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 340aa    MW: 36322 Da    PI: 6.2327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G05620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.3e-15121172155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  LPERR10G05620.1 121 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 172
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-14119176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-15119176No hitNo description
SuperFamilySSF474594.84E-17120186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.374120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-12121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALEAEVYSH GGHFGGYGLM GGCPAAPWCI GDDVFTAVGD SSGEPCGGSW DDTIFVPPLN  60
VQDMVDEWDQ VVDQCASSCK AAAAAAAAAE IGETPVVVKA AAKRKRRRAK AVKNKEEIES  120
QRMTHIAVER NRRRQMNDYL AVLRSLMPPS YAQRGDQASI VGGAINYVRE LEQLLQNIEA  180
KKSIKNIHND GDVGAGEHAS PFAGFFTFPQ YSTSGHGGGD AHRSRIVNSA EATAAGVGSD  240
SGAAIADIEA SMAEGHVSVK VQARWRPRQL LKLVAGLHHL GLTTLHLNVT TVNAMVMYCF  300
SLKVEDACKL GSVEEIATAV HEILQRIQEE QALVDAKTGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107KRKRRR
2103107RKRRR
3121132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G05620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.11e-127transcription factor bHLH96
SwissprotQ9C7T49e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D9XJ510.0A0A0D9XJ51_9ORYZ; Uncharacterized protein
STRINGLPERR10G05620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]