PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G05550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1041aa    MW: 116296 Da    PI: 5.8255
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G05550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.72.5e-54211382118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkD ++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  LPERR10G05550.1  21 LKEaQQRWLRPAEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDNHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 114
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  LPERR10G05550.1 115 QRRTYWMLEEDFMHIVLVHYLETK 138
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.4817143IPR005559CG-1 DNA-binding domain
SMARTSM010763.1E-7420138IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.5E-7463550IPR013783Immunoglobulin-like fold
CDDcd001020.00254463551No hitNo description
SuperFamilySSF812961.24E-18464550IPR014756Immunoglobulin E-set
PfamPF018331.7E-9464542IPR002909IPT domain
SuperFamilySSF484032.49E-15656759IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.0E-16659761IPR020683Ankyrin repeat-containing domain
CDDcd002041.68E-11663757No hitNo description
PROSITE profilePS5029715.804665759IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736698730IPR002110Ankyrin repeat
SuperFamilySSF525402.6E-8851909IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37858880IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114859888IPR000048IQ motif, EF-hand binding site
PfamPF006120.024860879IPR000048IQ motif, EF-hand binding site
SMARTSM000153.6E-4881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.834882906IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4884903IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MAAADSRRFA VVPQLDIAQI LKEAQQRWLR PAEICEILKN YRSFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDNHNWRKK KDGKTVKEAH ERLKSGSIDV LHCYYAHGEE NENFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSRTRGNNDM LQAAAMDSPL SQLPSQTIEG ESSVSGQFPE  180
YEEAESAEIV SLIHIPIMHS VSKAKFGATD IYSGGTGYYP FTQMQQQQQN GIGSVIDASV  240
FSSPIPASSI GNYQGQHDMG HTGFYSSSQH ELPVINDSNH ELATNGHESS WNMAIKPDEG  300
TTQLSHLQPF VHPEQGMPTE GQGVEYLTFD EVYTDGLSLK DISAAGADVE SFWQLSGATG  360
DMSARENSFQ QNDGSLEAAI GYPFLKPQSS NLSDILKDSF KKSDSFTRWM SKELPEVEDS  420
QIQSSSGAYW NTEEADSIIE ASSRDPLDQF TVAPMVLQDQ LFSIVEFSPS WTYASSKTKV  480
LVTGRFLHSN QVTERCKWSC MFGEAEVPAE ISADGTLRCY SPPHKPGRVP FYVTCSNRLA  540
CSEVREFEFR QSDSQYMDAP SPLGATNKVY FQIRLDNLLS LGQDDYQATI TNPSNEMIDL  600
SKKISFLLSN NDEWSKLLKL ADDNELLTDD QQDQYAENLI KEKLHVWLLH KVGNGGKGPG  660
VLDDEGLGVL HLAAALGYDW AIRPTIAAGV NINFRDFHGW TALHWAAFCG RERTVVALIA  720
LGAAPGALTD PHPNYPAAST PADLASANGH KGISGFLAES SLTSHLQALN LREANMSEIS  780
GLPGIGDITE RSALQPAIGD SLGAVRNAAQ AAARIYQVFR VQSFQRKQAI QYEGDKGGIS  840
DEQTFSLLSM KSSKPADPLH AAASRIQNKY RGWKGRKEFL LMRQRVVKIQ AHVRGHQVRK  900
HYRKIVWSVG IVEKVILRWR RRRAGLRGFR STEGAIESSS GGASTNSIID KPAGEDDDFL  960
QDGRKQTEER LQKALARVKS MVQYPEARDQ YQRILNVVSK MQESQTVQEK ILDESTEMDE  1020
GDFMSEFKEL WDDDTPLPGY F
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G05550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0D9XJ430.0A0A0D9XJ43_9ORYZ; Uncharacterized protein
STRINGLPERR10G05550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1