PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G03750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 350aa    MW: 39613.6 Da    PI: 5.0101
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G03750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC75.29.4e-24341325100
            NF-YC   5 fw...ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                      fw   ++qi+  td  + +lP +r++++++a  +   isa+ Pv+++k celfi eltlr+w+ a++++r+ l   di +a+ +t+ + fl d+
  LPERR10G03750.1  34 FWmwsQEQIDLGTDNWKLTLPTSRLRNVIRARANGMLISADLPVFVTKLCELFIQELTLRAWVFAQSQNRNILLDIDIVNAIVNTESYHFLADV 127
                      551123458888999999**************************************************************************** PP

            NF-YC  96 vprde 100
                      v r++
  LPERR10G03750.1 128 VRRHQ 132
                      *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.91E-1547139IPR009072Histone-fold
PfamPF008087.3E-752114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-1753129IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSIPANEGME GHEEESTFSR LLLLQQQQRA MLKFWMWSQE QIDLGTDNWK LTLPTSRLRN  60
VIRARANGML ISADLPVFVT KLCELFIQEL TLRAWVFAQS QNRNILLDID IVNAIVNTES  120
YHFLADVVRR HQVAKLTMSN TTVAKRHRPN KMNLSYHHTQ TINVSPLVDY LPFVGISPMA  180
LMGGKGDMVS ITSACDMKKM NNLRSMDSLN VVIDTTSRDA ATVNHQGRTT QPISFKDTCA  240
SLEDNYVVSD PVGHDDITDT GDDDDVNQLW NEEKNYGVHF LGEGNFSKES LLDRSLGGTM  300
KDDALLFSAK DFPLICYTHE EYNSEKDIRD DICSNSSNNA KKEPNKEQTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-1340130595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G03750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XIG60.0A0A0D9XIG6_9ORYZ; Uncharacterized protein
STRINGLPERR10G03750.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-19nuclear factor Y, subunit C2