PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G03490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 302aa    MW: 33698.5 Da    PI: 7.1248
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G03490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.22.1e-142633899
            NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
                      isa+ Pv+++k celfi el lr+ + a++++r+ l   di +a+++t+ + fl ++v ++
  LPERR10G03490.1  2 LISADLPVFVTKLCELFIQELMLRARVFAQSQNRNILLDIDIVNAIANTESYHFLANVVRHH 63
                     59******************************************************999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.7E-12260IPR009072Histone-fold
SuperFamilySSF471137.28E-11262IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLISADLPVF VTKLCELFIQ ELMLRARVFA QSQNRNILLD IDIVNAIANT ESYHFLANVV  60
RHHQLAKLTM SNTTVAKRHW PNKMNLSYHH TQTINVSLLV DCLPFVGISP MALMGAHRTE  120
SPTMLMMQEK VLPRDDKAKF TFNGPPVTIN KMCRRCDSLR NKKHINANTF VGDNSNATWV  180
SPHLLGGKGD LVSITSACDT KKMNNLRSID SLNVVIDTSS RDAATVNHQG RTTQPISFKD  240
TCASLEDNYV VSNPVGHDDI TGTGDDDDVN QLWNEEKNYG VHFLGEGNFP KSLCMTGLWG  300
EL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G03490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XID80.0A0A0D9XID8_9ORYZ; Uncharacterized protein
STRINGLPERR10G03490.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-09nuclear factor Y, subunit C2