PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G03470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 320aa    MW: 35150.1 Da    PI: 4.443
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G03470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC73.62.9e-2331131299
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      ++ fw+ +   ie++   ++  lP+  +k+i+ a+ed  m+s ++P++++k celf+ el lr+w+ a++ +r t+   di++a++ t+ f+fl
  LPERR10G03470.1  31 MEEFWKMRqkeIEESRGNQELILPIENVKNIIHAEEDGMMLSDDTPTFVTKLCELFVQELILRAWVCAQSENRDTILDIDIFKAIATTESFNFL 124
                      77899866444777777778889*********************************************************************** PP

            NF-YC  93 vdivprd 99 
                       ++v r+
  LPERR10G03470.1 125 HNVVRRH 131
                      **99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.04E-1630124IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.3E-2053129IPR009072Histone-fold
PfamPF008089.8E-953115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTIPAKEGWE DNDEDDTLSK LQLLAQQRHA MEEFWKMRQK EIEESRGNQE LILPIENVKN  60
IIHAEEDGMM LSDDTPTFVT KLCELFVQEL ILRAWVCAQS ENRDTILDID IFKAIATTES  120
FNFLHNVVRR HREQGGTIPD TVASNWKSHK LDQTTTVCHP LQAEQVSNIA GYPPHIPVCP  180
PSGQIGTEPT ACPLEFVTQT ESLLSGSKGK SPLNEVSIPS SKVSMNNSNA TATGCGASSS  240
DVATDAQHQG EHAHPSSVEY AFASLEYNCG VPTSPGHGDT ISGSADANIR QLEQEKQNIE  300
SLVGSQMDVD LVFPNKDLPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G03470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613386.11e-119uncharacterized protein LOC4348238
TrEMBLA0A0D9XID60.0A0A0D9XID6_9ORYZ; Uncharacterized protein
STRINGLPERR10G03470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-20nuclear factor Y, subunit C2