PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G02920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 514aa    MW: 57399.3 Da    PI: 4.6094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G02920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.72e-31291632128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatgk 88 
                      ppGf+F Ptdeel+++yL++k++g   +l +vi+evdi++++P +L + +k+ +e++wyfF+kr +++++ ++++nr+     +++g W+atg+
  LPERR10G02920.1  29 PPGFHFVPTDEELIDHYLRRKIHGLMSPL-NVINEVDIMSIDPVKLIEIYKGyGENRWYFFTKRTQSKTKkQDEPNRKvvvegVEEGSWSATGS 121
                      9*************************999.99**************8433333788*******99888762668899656666669******** PP

              NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + + ++     g ++g+k++L++ ++r+p+  + +W mhey +
  LPERR10G02920.1 122 LTYIRRTagmdPGIAIGTKRVLTYRSARSPE--EDKWSMHEYVM 163
                      ****99855555556*********9777777..89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3523180IPR003441NAC domain
PROSITE profilePS5100537.00728180IPR003441NAC domain
PfamPF023651.9E-1929162IPR003441NAC domain
SuperFamilySSF511263.03E-5299436IPR011050Pectin lyase fold/virulence factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MQQINSGDWL PPASNPSRKH QLVKELQFPP GFHFVPTDEE LIDHYLRRKI HGLMSPLNVI  60
NEVDIMSIDP VKLIEIYKGY GENRWYFFTK RTQSKTKKQD EPNRKVVVEG VEEGSWSATG  120
SLTYIRRTAG MDPGIAIGTK RVLTYRSARS PEEDKWSMHE YVMTDFTQMG QFVLCAIQLK  180
QTYEAEKKAQ EDGKIRGNKR KRRATRKGMK NMQPISQAQE EHQQETSQPG NTNGDPYGLS  240
FNSSSMQMVC EDASGKCSCG NCQGNNGILQ PADQTGNPAV FYNQQQQSMN LADGQLMNTP  300
AGYSEHLRNY QNQFYLEGDN GSSSSGEGLH RRHNSNLTLE NVNTYAGNIY QDGSIVPVGG  360
ALEQRDNTNL TWEDVHFYDG ITLPEAVDQL HNTNFTWGDD DIFSGNTVLD GSMDDFPQDP  420
LIGGVSIEDL VLCDAFLPNP GCDDSSGQSM GIQPVAEHRM GDYDYEKYDD EALVALFNSD  480
SLSGSLPYVN FTGDNGGIPE ESNQGSLICH SENR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-192318212167NO APICAL MERISTEM PROTEIN
1ut4_B2e-192318212167NO APICAL MERISTEM PROTEIN
1ut7_A2e-192318212167NO APICAL MERISTEM PROTEIN
1ut7_B2e-192318212167NO APICAL MERISTEM PROTEIN
4dul_A2e-192318212167NAC domain-containing protein 19
4dul_B2e-192318212167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G02920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XI660.0A0A0D9XI66_9ORYZ; Uncharacterized protein
STRINGLPERR10G02920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-22NAC domain containing protein 32