PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G02310.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 282aa MW: 29464.6 Da PI: 7.0938

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G02310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.8e-40	38	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p+++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++e LPERR10G02310.1 38 PCGACKFLRRKCVQGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLQQIPHHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQHQVAGLQSE 131 7*********************9989************************************************************** PP DUF260 94 lallkee 100 l++l+++ LPERR10G02310.1 132 LNYLQAH 138 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.329	37	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-40	38	136	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSSSVVLSAS SGGGGVGGGN GGGGGGNGGG GSGGGGGPCG ACKFLRRKCV QGCIFAPYFD 60 SEQGAAHFAA VHKVFGASNV SKLLQQIPHH KRLDAVVTIC YEAQARLRDP VYGCVAHIFA 120 LQHQVAGLQS ELNYLQAHLT SMEVPSPAPA QPQPLMPMTA ATAGNFNFSN LPSSSSNVPV 180 TADLSTLFEP LPATQPQWGL FQQQQPQQQQ HHHHQQQLQL QHQHQQHPYD RMGDGSSSSR 240 VGGAGDDDGS DGGDLQALAR ELLDRHGRSA SSSKLDPPPH TQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-38	34	133	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-38	34	133	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G02310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB200236	1e-113	AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613830.1	1e-107	LOB domain-containing protein 30
Swissprot	O81323	3e-64	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A0D9XHZ1	0.0	A0A0D9XHZ1_9ORYZ; Uncharacterized protein
STRING	LPERR10G02310.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-58	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]